Feature identity
- Identifier
- PaHa_c110g00010.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,461 bp
- Genomic location
- unplaced_contig_110:1,439–3,272
- Strand
- −
Hass · mRNA
PaHa_c110g00010.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,461
- bp
- unplaced_contig_110:1,439–3,272
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c110g00010
- eggNOG
- Preferred name: FUM21 | Seed ortholog: 1043002.A0A074XL28 | COG: S | eggNOG OG: Fungal_trans@131567|A-1*, Fungal_trans@2759|AM-7, Fungal_trans@4751|FfP-33!, Fungal_trans@5579|LPs-37, Zn_clus@131567|A-1*, Zn_clus@2759|JuA-33, Zn_clus@5579|tTI-50
- Gene Ontology
- GO:0000228 nuclear chromosome; GO:0000785 chromatin; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0006357 regulation of transcription by RNA polymerase II; GO:0008150 biological_process; GO:0008270 zinc ion binding
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c110g00010.1-protein
derives_fromgenePaHa_c110g00010
CDS
part_ofPaHa_c110g00010.1-CDS-unplaced_contig_110-1787993825:1439..1590CDS
part_ofPaHa_c110g00010.1-CDS-unplaced_contig_110-1787993825:1664..2120CDS
part_ofPaHa_c110g00010.1-CDS-unplaced_contig_110-1787993825:2189..2269CDS
part_ofPaHa_c110g00010.1-CDS-unplaced_contig_110-1787993825:2381..2737CDS
part_ofPaHa_c110g00010.1-CDS-unplaced_contig_110-1787993825:2859..3272exon
part_ofPaHa_c110g00010.1-exon-unplaced_contig_110-1787993825:1439..1590exon
part_ofPaHa_c110g00010.1-exon-unplaced_contig_110-1787993825:1664..2120exon
part_ofPaHa_c110g00010.1-exon-unplaced_contig_110-1787993825:2189..2269exon
part_ofPaHa_c110g00010.1-exon-unplaced_contig_110-1787993825:2381..2737exon
part_ofPaHa_c110g00010.1-exon-unplaced_contig_110-1787993825:2859..3272