Feature identity
- Identifier
- PaHa_c108g00030.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,326 bp
- Genomic location
- unplaced_contig_108:1,872–3,244
- Strand
- −
Hass · mRNA
PaHa_c108g00030.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,326
- bp
- unplaced_contig_108:1,872–3,244
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c108g00030
- eggNOG
- Preferred name: POT1 | Seed ortholog: 1448308.A0A2T2N6M5 | COG: COG0183 | eggNOG OG: Thiolase_C@131567|Tu-17, Thiolase_C@2759|Bgj-26, Thiolase_N@131567|Mj-14, Thiolase_N@33154|BZH-23
- Gene Ontology
- GO:0003729 mRNA binding; GO:0003988 acetyl-CoA C-acyltransferase activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005758 mitochondrial intermembrane space; GO:0005777 peroxisome; GO:0005782 peroxisomal matrix; GO:0005829 cytosol; GO:0006635 fatty acid beta-oxidation; GO:0008150 biological_process; GO:0019395 fatty acid oxidation; GO:0046456 icosanoid biosynthetic process
- KEGG
- EC: ec:2.3.1.16 | KO: K07513 | Pathway: 00071, 00280, 00592, 01040, 01100, 01110, 01212, 04146 | Module: M00087, M00113, M00861 | BRITE: 00001, 01000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c108g00030.1-protein
derives_fromgenePaHa_c108g00030
CDS
part_ofPaHa_c108g00030.1-CDS-unplaced_contig_108-1787993825:1872..2795CDS
part_ofPaHa_c108g00030.1-CDS-unplaced_contig_108-1787993825:2843..3244exon
part_ofPaHa_c108g00030.1-exon-unplaced_contig_108-1787993825:1872..2795exon
part_ofPaHa_c108g00030.1-exon-unplaced_contig_108-1787993825:2843..3244