Hass · mRNA

PaHa_c103g00380.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,305
bp
unplaced_contig_103:44,574–45,878
genomic location
Record overview

Feature identity

Identifier
PaHa_c103g00380.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,305 bp
Genomic location
unplaced_contig_103:44,574–45,878
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: PRP46 | Seed ortholog: 535722.E4UNC4 | COG: COG2319 | eggNOG OG: WD40@131567|EAq-24!
Gene Ontology
GO:0000398 mRNA splicing, via spliceosome; GO:0000974 Prp19 complex; GO:0001650 fibrillar center; GO:0003674 molecular_function; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005662 DNA replication factor A complex; GO:0005681 spliceosomal complex; GO:0005829 cytosol; GO:0006396 RNA processing; GO:0007030 Golgi organization; GO:0008150 biological_process; GO:0009306 protein secretion; GO:0009749 response to glucose; GO:0009755 hormone-mediated signaling pathway; GO:0010154 fruit development; GO:0010182 sugar mediated signaling pathway; GO:0010215 cellulose microfibril organization; GO:0016607 nuclear speck; GO:0031965 nuclear membrane; GO:0034504 protein localization to nucleus; GO:0042742 defense response to bacterium; GO:0043066 negative regulation of apoptotic process; GO:0043518 negative regulation of DNA damage response, signal transduction by p53 class mediator; GO:0045292 mRNA cis splicing, via spliceosome; GO:0045892 negative regulation of DNA-templated transcription; GO:0048364 root development; GO:0048366 leaf development; GO:0048825 cotyledon development; GO:0050832 defense response to fungus; GO:0071006 U2-type catalytic step 1 spliceosome; GO:0071007 U2-type catalytic step 2 spliceosome; GO:0071011 precatalytic spliceosome; GO:0071013 catalytic step 2 spliceosome; GO:0071014 post-mRNA release spliceosomal complex; GO:0071018 U12-type catalytic step 2 spliceosome; GO:0071020 post-spliceosomal complex; GO:0080008 Cul4-RING E3 ubiquitin ligase complex; GO:1900087 positive regulation of G1/S transition of mitotic cell cycle
KEGG
KO: K12862 | Pathway: 03040 | BRITE: 00001, 03041, 03400
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa_c103g00380.1-CDS-unplaced_contig_103-1787993825:44574..45878
part_of
exonPaHa_c103g00380.1-exon-unplaced_contig_103-1787993825:44574..45878
part_of