Feature identity
- Identifier
- PaHa_c103g00260.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,002 bp
- Genomic location
- unplaced_contig_103:26,560–27,694
- Strand
- −
Hass · mRNA
PaHa_c103g00260.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,002
- bp
- unplaced_contig_103:26,560–27,694
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c103g00260
- eggNOG
- Preferred name: TFB4 | Seed ortholog: 914237.A0A1E1KET0 | COG: S | eggNOG OG: Tfb4@2759|A-1
- Gene Ontology
- GO:0000112 nucleotide-excision repair factor 3 complex; GO:0000439 transcription factor TFIIH core complex; GO:0003674 molecular_function; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005675 transcription factor TFIIH holo complex; GO:0005829 cytosol; GO:0006289 nucleotide-excision repair; GO:0006366 transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0008270 zinc ion binding; GO:0016251 RNA polymerase II general transcription initiation factor activity
- KEGG
- EC: ec:2.1.1.57 | KO: K03143 | Pathway: 03022, 03420 | BRITE: 00001, 03021, 03400
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c103g00260.1-protein
derives_fromgenePaHa_c103g00260
CDS
part_ofPaHa_c103g00260.1-CDS-unplaced_contig_103-1787993825:26560..27515CDS
part_ofPaHa_c103g00260.1-CDS-unplaced_contig_103-1787993825:27649..27694exon
part_ofPaHa_c103g00260.1-exon-unplaced_contig_103-1787993825:26560..27515exon
part_ofPaHa_c103g00260.1-exon-unplaced_contig_103-1787993825:27649..27694