Feature identity
- Identifier
- PaHa_c103g00100.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,056 bp
- Genomic location
- unplaced_contig_103:8,310–9,481
- Strand
- +
Hass · mRNA
PaHa_c103g00100.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,056
- bp
- unplaced_contig_103:8,310–9,481
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c103g00100
- eggNOG
- Preferred name: pta1 | Seed ortholog: 331657.A0A4U0WM11 | COG: S | eggNOG OG: SYMPK_PTA1_N@2759|A-1
- Gene Ontology
- GO:0003674 molecular_function; GO:0003723 RNA binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005847 mRNA cleavage and polyadenylation specificity factor complex; GO:0008033 tRNA processing; GO:0008150 biological_process; GO:0009410 response to xenobiotic stimulus; GO:0030846 termination of RNA polymerase II transcription, poly(A)-coupled; GO:0180010 co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway
- KEGG
- KO: K06100 | Pathway: 03015 | BRITE: 00001, 03019, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c103g00100.1-protein
derives_fromgenePaHa_c103g00100
CDS
part_ofPaHa_c103g00100.1-CDS-unplaced_contig_103-1787993825:8310..8612CDS
part_ofPaHa_c103g00100.1-CDS-unplaced_contig_103-1787993825:8683..8914CDS
part_ofPaHa_c103g00100.1-CDS-unplaced_contig_103-1787993825:8961..9481exon
part_ofPaHa_c103g00100.1-exon-unplaced_contig_103-1787993825:8310..8612exon
part_ofPaHa_c103g00100.1-exon-unplaced_contig_103-1787993825:8683..8914exon
part_ofPaHa_c103g00100.1-exon-unplaced_contig_103-1787993825:8961..9481