Feature identity
- Identifier
- PaHa01g35540.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,544 bp
- Genomic location
- 1:88,450,539–88,459,355
- Strand
- +
Hass · mRNA
PaHa01g35540.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,544
- bp
- 1:88,450,539–88,459,355
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g35540
- eggNOG
- Preferred name: LOC107808546 | Seed ortholog: 337451.A0A3S3MRI0 | COG: S | eggNOG OG: JmjC@131567|Ae-7, JmjC@2759|IC-12!, JmjC@33090|Xb-17, JmjC@58023|Adw-25, JmjN@131567|A-1*, JmjN@2759|U-5!, JmjN@33090|BQ-10, JmjN@3398|FO-14, zf-C5HC2@131567|A-1*, zf-C5HC2@2759|C-2!, zf-C5HC2@3398|Fx-13
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009266 response to temperature stimulus; GO:0032452 histone demethylase activity; GO:0042393 histone binding; GO:0045814 negative regulation of gene expression, epigenetic; GO:0048571 long-day photoperiodism; GO:0048577 negative regulation of short-day photoperiodism, flowering; GO:0048579 negative regulation of long-day photoperiodism, flowering; GO:0071558 histone H3K27me2/H3K27me3 demethylase activity
- KEGG
- EC: ec:1.14.11.66, ec:1.14.11.67, ec:1.14.11.69 | KO: K06709, K11446, K11478 | Pathway: 03083, 04550 | BRITE: 00001, 01000, 01009, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g35540.1-protein
derives_frommRNAPaHa01g35540.1
mRNAPaHa01g35540.1
part_ofgenePaHa01g35540
CDS
part_ofPaHa01g35540.1-CDS-1-1787993825:88450539..88450848mRNAPaHa01g35540.1
CDS
part_ofPaHa01g35540.1-CDS-1-1787993825:88453599..88453755mRNAPaHa01g35540.1
CDS
part_ofPaHa01g35540.1-CDS-1-1787993825:88453820..88454039mRNAPaHa01g35540.1
CDS
part_ofPaHa01g35540.1-CDS-1-1787993825:88454796..88454849mRNAPaHa01g35540.1
CDS
part_ofPaHa01g35540.1-CDS-1-1787993825:88454945..88455024mRNAPaHa01g35540.1
CDS
part_ofPaHa01g35540.1-CDS-1-1787993825:88455193..88455470mRNAPaHa01g35540.1
CDS
part_ofPaHa01g35540.1-CDS-1-1787993825:88455634..88456038mRNAPaHa01g35540.1
CDS
part_ofPaHa01g35540.1-CDS-1-1787993825:88456146..88456738mRNAPaHa01g35540.1
CDS
part_ofPaHa01g35540.1-CDS-1-1787993825:88458909..88459355mRNAPaHa01g35540.1
exon
part_ofPaHa01g35540.1-exon-1-1787993825:88450539..88450848mRNAPaHa01g35540.1
exon
part_ofPaHa01g35540.1-exon-1-1787993825:88453599..88453755mRNAPaHa01g35540.1
exon
part_ofPaHa01g35540.1-exon-1-1787993825:88453820..88454039mRNAPaHa01g35540.1
exon
part_ofPaHa01g35540.1-exon-1-1787993825:88454796..88454849mRNAPaHa01g35540.1
exon
part_ofPaHa01g35540.1-exon-1-1787993825:88454945..88455024mRNAPaHa01g35540.1
exon
part_ofPaHa01g35540.1-exon-1-1787993825:88455193..88455470mRNAPaHa01g35540.1
exon
part_ofPaHa01g35540.1-exon-1-1787993825:88455634..88456038mRNAPaHa01g35540.1
exon
part_ofPaHa01g35540.1-exon-1-1787993825:88456146..88456738mRNAPaHa01g35540.1
exon
part_ofPaHa01g35540.1-exon-1-1787993825:88458909..88459355mRNAPaHa01g35540.1
