Feature identity
- Identifier
- PaHa_c81g00040.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,265 bp
- Genomic location
- unplaced_contig_81:79,267–87,702
- Strand
- +
Hass · mRNA
PaHa_c81g00040.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,265
- bp
- unplaced_contig_81:79,267–87,702
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c81g00040
- eggNOG
- Preferred name: REF6 | Seed ortholog: 337451.A0A3S3NUI3 | COG: S | eggNOG OG: JmjC@131567|Ae-7, JmjC@2759|IC-12!, JmjC@33090|Xb-17, JmjC@58023|Adw-25, JmjN@131567|A-1*, JmjN@2759|U-5!, JmjN@33090|BQ-10, JmjN@3398|FO-14, zf-C5HC2@131567|A-1*, zf-C5HC2@2759|C-2!, zf-C5HC2@3398|Fx-13
- Gene Ontology
- GO:0000792 heterochromatin; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009266 response to temperature stimulus; GO:0032452 histone demethylase activity; GO:0032454 histone H3K9 demethylase activity; GO:0042393 histone binding; GO:0045814 negative regulation of gene expression, epigenetic; GO:0045815 transcription initiation-coupled chromatin remodeling; GO:0048439 flower morphogenesis; GO:0048571 long-day photoperiodism; GO:0048577 negative regulation of short-day photoperiodism, flowering; GO:0048579 negative regulation of long-day photoperiodism, flowering; GO:0071558 histone H3K27me2/H3K27me3 demethylase activity
- KEGG
- EC: ec:1.14.11.66, ec:1.14.11.67, ec:1.14.11.69 | KO: K06709, K11446, K11478 | Pathway: 03083, 04550 | BRITE: 00001, 01000, 01009, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c81g00040.1-protein
derives_frommRNAPaHa_c81g00040.1
mRNAPaHa_c81g00040.1
part_ofgenePaHa_c81g00040
CDS
part_ofPaHa_c81g00040.1-CDS-unplaced_contig_81-1787993825:79267..79269mRNAPaHa_c81g00040.1
CDS
part_ofPaHa_c81g00040.1-CDS-unplaced_contig_81-1787993825:81445..81829mRNAPaHa_c81g00040.1
CDS
part_ofPaHa_c81g00040.1-CDS-unplaced_contig_81-1787993825:82080..82236mRNAPaHa_c81g00040.1
CDS
part_ofPaHa_c81g00040.1-CDS-unplaced_contig_81-1787993825:82313..82532mRNAPaHa_c81g00040.1
CDS
part_ofPaHa_c81g00040.1-CDS-unplaced_contig_81-1787993825:85656..85709mRNAPaHa_c81g00040.1
CDS
part_ofPaHa_c81g00040.1-CDS-unplaced_contig_81-1787993825:85797..85876mRNAPaHa_c81g00040.1
CDS
part_ofPaHa_c81g00040.1-CDS-unplaced_contig_81-1787993825:85972..86249mRNAPaHa_c81g00040.1
CDS
part_ofPaHa_c81g00040.1-CDS-unplaced_contig_81-1787993825:86416..86820mRNAPaHa_c81g00040.1
CDS
part_ofPaHa_c81g00040.1-CDS-unplaced_contig_81-1787993825:86928..87340mRNAPaHa_c81g00040.1
CDS
part_ofPaHa_c81g00040.1-CDS-unplaced_contig_81-1787993825:87433..87702mRNAPaHa_c81g00040.1
exon
part_ofPaHa_c81g00040.1-exon-unplaced_contig_81-1787993825:79267..79269mRNAPaHa_c81g00040.1
exon
part_ofPaHa_c81g00040.1-exon-unplaced_contig_81-1787993825:81445..81829mRNAPaHa_c81g00040.1
exon
part_ofPaHa_c81g00040.1-exon-unplaced_contig_81-1787993825:82080..82236mRNAPaHa_c81g00040.1
exon
part_ofPaHa_c81g00040.1-exon-unplaced_contig_81-1787993825:82313..82532mRNAPaHa_c81g00040.1
exon
part_ofPaHa_c81g00040.1-exon-unplaced_contig_81-1787993825:85656..85709mRNAPaHa_c81g00040.1
exon
part_ofPaHa_c81g00040.1-exon-unplaced_contig_81-1787993825:85797..85876mRNAPaHa_c81g00040.1
exon
part_ofPaHa_c81g00040.1-exon-unplaced_contig_81-1787993825:85972..86249mRNAPaHa_c81g00040.1
exon
part_ofPaHa_c81g00040.1-exon-unplaced_contig_81-1787993825:86416..86820mRNAPaHa_c81g00040.1
exon
part_ofPaHa_c81g00040.1-exon-unplaced_contig_81-1787993825:86928..87340mRNAPaHa_c81g00040.1
exon
part_ofPaHa_c81g00040.1-exon-unplaced_contig_81-1787993825:87433..87702mRNAPaHa_c81g00040.1
