Feature identity
- Identifier
- PaHa_c78g00160.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,158 bp
- Genomic location
- unplaced_contig_78:25,178–26,420
- Strand
- −
Hass · mRNA
PaHa_c78g00160.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,158
- bp
- unplaced_contig_78:25,178–26,420
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c78g00160
- eggNOG
- Preferred name: SCS7 | Seed ortholog: 1043005.A0A074Y879 | COG: COG3000 | eggNOG OG: Cyt-b5@131567|IC-12, FA_hydroxylase@131567|N-4
- Gene Ontology
- GO:0000038 very long-chain fatty acid metabolic process; GO:0005783 endoplasmic reticulum; GO:0005789 endoplasmic reticulum membrane; GO:0005829 cytosol; GO:0006673 inositol phosphoceramide metabolic process; GO:0006675 mannosyl-inositol phosphorylceramide metabolic process; GO:0008270 zinc ion binding; GO:0016020 membrane; GO:0030148 sphingolipid biosynthetic process; GO:0046513 ceramide biosynthetic process; GO:0051999 mannosyl-inositol phosphorylceramide biosynthetic process; GO:0080132 fatty acid 2-hydroxylase activity; GO:0102772 sphingolipid C4-monooxygenase activity
- KEGG
- EC: ec:1.14.18.6 | KO: K19703 | BRITE: 00001, 01000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c78g00160.1-protein
derives_frommRNAPaHa_c78g00160.1
mRNAPaHa_c78g00160.1
part_ofgenePaHa_c78g00160
CDS
part_ofPaHa_c78g00160.1-CDS-unplaced_contig_78-1787993825:25178..25376mRNAPaHa_c78g00160.1
CDS
part_ofPaHa_c78g00160.1-CDS-unplaced_contig_78-1787993825:25462..26420mRNAPaHa_c78g00160.1
exon
part_ofPaHa_c78g00160.1-exon-unplaced_contig_78-1787993825:25178..25376mRNAPaHa_c78g00160.1
exon
part_ofPaHa_c78g00160.1-exon-unplaced_contig_78-1787993825:25462..26420mRNAPaHa_c78g00160.1
