Anise · mRNA

scaffold46.g83553.m1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

582
bp
scaffold46:84–665
genomic location
Record overview

Feature identity

Identifier
scaffold46.g83553.m1
Feature type
mRNA
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
582 bp
Genomic location
scaffold46:84–665
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
29760.VIT_13s0019g02630.t01,C,[Photosystem II (PSII) is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1 D2 (PsbA PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors]
Gene Ontology
Photosystem II (PSII) is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1 D2 (PsbA PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors | - | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005737//cytoplasm; GO:0009507//chloroplast; GO:0009532//plastid stroma; GO:0009534//chloroplast thylakoid; GO:0009535//chloroplast thylakoid membrane; GO:0009536//plastid; GO:0009570//chloroplast stroma; GO:0009579//thylakoid; GO:0010287//plastoglobule; GO:0016020//membrane; GO:0031976//plastid thylakoid; GO:0031984//organelle subcompartment; GO:0034357//photosynthetic membrane; GO:0042651//thylakoid membrane; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044434//chloroplast part; GO:0044435//plastid part; GO:0044436//thylakoid part; GO:0044444//cytoplasmic part; GO:0044446//intracellular organelle part; GO:0044464//cell part; GO:0055035//plastid thylakoid membrane | GO:0003674//molecular_function; GO:0005488//binding; GO:0016168//chlorophyll binding; GO:0043167//ion binding; GO:0043168//anion binding; GO:0046906//tetrapyrrole binding; GO:0048037//cofactor binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
KEGG
K02703 | psbA
NR
AMB17188.1 photosystem II protein D1, partial [Oryza punctata]
Swiss-Prot
Q7YJY8.1 RecName: Full=Photosystem II protein D1; Short=PSII D1 protein; AltName: Full=Photosystem II Q(B) protein; Flags: Precursor [Calycanthus floridus var. glaucus]
Biological context

Connected feature records

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