Anise · gene

Chr01.g07245

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

47,169
bp
Chr01:69,435,485–69,482,653
genomic location
Record overview

Feature identity

Identifier
Chr01.g07245
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
47,169 bp
Genomic location
Chr01:69,435,485–69,482,653
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010253775.1,S,[Acyl-CoA N-acyltransferase with RING FYVE PHD-type zinc finger protein]
Gene Ontology
Acyl-CoA N-acyltransferase with RING FYVE PHD-type zinc finger protein | GO:0000122//negative regulation of transcription from RNA polymerase II promoter; GO:0006325//chromatin organization; GO:0006355//regulation of transcription, DNA-templated; GO:0006357//regulation of transcription from RNA polymerase II promoter; GO:0006464//cellular protein modification process; GO:0006476//protein deacetylation; GO:0006807//nitrogen compound metabolic process; GO:0006996//organelle organization; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009889//regulation of biosynthetic process; GO:0009890//negative regulation of biosynthetic process; GO:0009892//negative regulation of metabolic process; GO:0009987//cellular process; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010558//negative regulation of macromolecule biosynthetic process; GO:0010605//negative regulation of macromolecule metabolic process; GO:0010629//negative regulation of gene expression; GO:0016043//cellular component organization; GO:0016569//covalent chromatin modification; GO:0016570//histone modification; GO:0016575//histone deacetylation; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0019538//protein metabolic process; GO:0030334//regulation of cell migration; GO:0030336//negative regulation of cell migration; GO:0031323//regulation of cellular metabolic process; GO:0031324//negative regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031327//negative regulation of cellular biosynthetic process; GO:0032392//DNA geometric change; GO:0032508//DNA duplex unwinding; GO:0032879//regulation of localization; GO:0035601//protein deacylation; GO:0036211//protein modification process; GO:0040012//regulation of locomotion; GO:0040013//negative regulation of locomotion; GO:0043170//macromolecule metabolic process; GO:0043412//macromolecule modification; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044260//cellular macromolecule metabolic process; GO:0044267//cellular protein metabolic process; GO:0045892//negative regulation of transcription, DNA-templated; GO:0045934//negative regulation of nucleobase-containing compound metabolic process; GO:0048519//negative regulation of biological process; GO:0048523//negative regulation of cellular process; GO:0050789//regulation of biological process; GO:0050794//regulation of cellular process; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051172//negative regulation of nitrogen compound metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0051253//negative regulation of RNA metabolic process; GO:0051270//regulation of cellular component movement; GO:0051271//negative regulation of cellular component movement; GO:0051276//chromosome organization; GO:0060255//regulation of macromolecule metabolic process; GO:0065007//biological regulation; GO:0071103//DNA conformation change; GO:0071704//organic substance metabolic process; GO:0071840//cellular component organization or biogenesis; GO:0080090//regulation of primary metabolic process; GO:0098732//macromolecule deacylation; GO:1901564//organonitrogen compound metabolic process; GO:1902679//negative regulation of RNA biosynthetic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:1903507//negative regulation of nucleic acid-templated transcription; GO:1903756//regulation of transcription from RNA polymerase II promoter by histone modification; GO:1903758//negative regulation of transcription from RNA polymerase II promoter by histone modification; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2000113//negative regulation of cellular macromolecule biosynthetic process; GO:2000145//regulation of cell motility; GO:2000146//negative regulation of cell motility; GO:2001141//regulation of RNA biosynthetic process | GO:0000118//histone deacetylase complex; GO:0000228//nuclear chromosome; GO:0000785//chromatin; GO:0000790//nuclear chromatin; GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005654//nucleoplasm; GO:0005694//chromosome; GO:0005737//cytoplasm; GO:0005813//centrosome; GO:0005815//microtubule organizing center; GO:0005856//cytoskeleton; GO:0015630//microtubule cytoskeleton; GO:0016581//NuRD complex; GO:0017053//transcriptional repressor complex; GO:0031974//membrane-enclosed lumen; GO:0031981//nuclear lumen; GO:0032991//macromolecular complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043228//non-membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043232//intracellular non-membrane-bounded organelle; GO:0043233//organelle lumen; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044427//chromosomal part; GO:0044428//nuclear part; GO:0044430//cytoskeletal part; GO:0044446//intracellular organelle part; GO:0044451//nucleoplasm part; GO:0044454//nuclear chromosome part; GO:0044464//cell part; GO:0070013//intracellular organelle lumen; GO:0070603//SWI/SNF superfamily-type complex; GO:0090545//CHD-type complex; GO:0090568//nuclear transcriptional repressor complex; GO:1902494//catalytic complex; GO:1904949//ATPase complex | GO:0000976//transcription regulatory region sequence-specific DNA binding; GO:0000977//RNA polymerase II regulatory region sequence-specific DNA binding; GO:0001012//RNA polymerase II regulatory region DNA binding; GO:0001067//regulatory region nucleic acid binding; GO:0001085//RNA polymerase II transcription factor binding; GO:0001103//RNA polymerase II repressing transcription factor binding; GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0003678//DNA helicase activity; GO:0003682//chromatin binding; GO:0003690//double-stranded DNA binding; GO:0003712//transcription cofactor activity; GO:0003714//transcription corepressor activity; GO:0003824//catalytic activity; GO:0004003//ATP-dependent DNA helicase activity; GO:0004386//helicase activity; GO:0004407//histone deacetylase activity; GO:0005488//binding; GO:0005515//protein binding; GO:0008026//ATP-dependent helicase activity; GO:0008094//DNA-dependent ATPase activity; GO:0008134//transcription factor binding; GO:0008270//zinc ion binding; GO:0016462//pyrophosphatase activity; GO:0016787//hydrolase activity; GO:0016810//hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; GO:0016811//hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; GO:0016817//hydrolase activity, acting on acid anhydrides; GO:0016818//hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; GO:0016887//ATPase activity; GO:0017111//nucleoside-triphosphatase activity; GO:0019213//deacetylase activity; GO:0019899//enzyme binding; GO:0033558//protein deacetylase activity; GO:0035064//methylated histone binding; GO:0042393//histone binding; GO:0042623//ATPase activity, coupled; GO:0042826//histone deacetylase binding; GO:0043167//ion binding; GO:0043169//cation binding; GO:0043565//sequence-specific DNA binding; GO:0044212//transcription regulatory region DNA binding; GO:0046872//metal ion binding; GO:0046914//transition metal ion binding; GO:0070035//purine NTP-dependent helicase activity; GO:0070491//repressing transcription factor binding; GO:0070577//lysine-acetylated histone binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding; GO:1990837//sequence-specific double-stranded DNA binding
NR
RWR80206.1 GNAT domain-containing protein [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
F4IXE7.1 RecName: Full=Increased DNA methylation 1; AltName: Full=Histone H3 acetyltransferase IDM1; AltName: Full=Protein ROS4; AltName: Full=Repressor of silencing 4 [Arabidopsis thaliana]
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.