Hass · mRNA

PaHa12g16140.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,843
bp
12:47,586,588–47,608,571
genomic location
Record overview

Feature identity

Identifier
PaHa12g16140.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
3,843 bp
Genomic location
12:47,586,588–47,608,571
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC103704822 | Seed ortholog: 337451.A0A3S4PXS7 | COG: S | eggNOG OG: DDT@131567|U-5, WAC_Acf1_DNA_bd@2759|A-1, WSD@131567|A-1*, WSD@2759|BF-8!
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000228 nuclear chromosome; GO:0000793 condensed chromosome; GO:0000976 transcription cis-regulatory region binding; GO:0001671 ATPase activator activity; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0004713 protein tyrosine kinase activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005721 pericentric heterochromatin; GO:0005730 nucleolus; GO:0006261 DNA-templated DNA replication; GO:0006275 regulation of DNA replication; GO:0006325 chromatin organization; GO:0006334 nucleosome assembly; GO:0006335 DNA replication-dependent chromatin assembly; GO:0006338 chromatin remodeling; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006974 DNA damage response; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0008623 CHRAC; GO:0010172 embryonic body morphogenesis; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0016590 ACF complex; GO:0031010 ISWI-type complex; GO:0031445 regulation of heterochromatin formation; GO:0031509 subtelomeric heterochromatin formation; GO:0031555 transcriptional attenuation; GO:0036268 swimming; GO:0042393 histone binding; GO:0043596 nuclear replication fork; GO:0043687 post-translational protein modification; GO:0045740 positive regulation of DNA replication; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0045943 positive regulation of transcription by RNA polymerase I; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0045945 positive regulation of transcription by RNA polymerase III; GO:0048510 regulation of timing of transition from vegetative to reproductive phase; GO:0060590 ATPase regulator activity; GO:0071444 cellular response to pheromone; GO:0090535 WICH complex; GO:0110016 B-WICH complex; GO:0140801 histone H2AXY142 kinase activity; GO:1905213 negative regulation of mitotic chromosome condensation
KEGG
EC: ec:2.3.1.48 | KO: K11655, K11658, K22768 | Pathway: 03082 | BRITE: 00001, 01000, 03036
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa12g16140.1-CDS-12-1787993825:47586588..47586700
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CDSPaHa12g16140.1-CDS-12-1787993825:47593906..47594078
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CDSPaHa12g16140.1-CDS-12-1787993825:47594670..47595034
part_of
CDSPaHa12g16140.1-CDS-12-1787993825:47595178..47595262
part_of
CDSPaHa12g16140.1-CDS-12-1787993825:47596249..47596637
part_of
CDSPaHa12g16140.1-CDS-12-1787993825:47596785..47596875
part_of
CDSPaHa12g16140.1-CDS-12-1787993825:47596954..47597236
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CDSPaHa12g16140.1-CDS-12-1787993825:47598355..47598532
part_of
CDSPaHa12g16140.1-CDS-12-1787993825:47598990..47599193
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CDSPaHa12g16140.1-CDS-12-1787993825:47599911..47599999
part_of
CDSPaHa12g16140.1-CDS-12-1787993825:47600108..47600247
part_of
CDSPaHa12g16140.1-CDS-12-1787993825:47600372..47600445
part_of
CDSPaHa12g16140.1-CDS-12-1787993825:47601928..47602076
part_of
CDSPaHa12g16140.1-CDS-12-1787993825:47602173..47602238
part_of
CDSPaHa12g16140.1-CDS-12-1787993825:47602335..47602401
part_of
CDSPaHa12g16140.1-CDS-12-1787993825:47603009..47603107
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CDSPaHa12g16140.1-CDS-12-1787993825:47603192..47603295
part_of
CDSPaHa12g16140.1-CDS-12-1787993825:47605385..47605532
part_of
CDSPaHa12g16140.1-CDS-12-1787993825:47606152..47606232
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CDSPaHa12g16140.1-CDS-12-1787993825:47606325..47606783
part_of
CDSPaHa12g16140.1-CDS-12-1787993825:47607344..47607667
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CDSPaHa12g16140.1-CDS-12-1787993825:47608272..47608427
part_of
CDSPaHa12g16140.1-CDS-12-1787993825:47608566..47608571
part_of
exonPaHa12g16140.1-exon-12-1787993825:47586588..47586700
part_of
exonPaHa12g16140.1-exon-12-1787993825:47593906..47594078
part_of
exonPaHa12g16140.1-exon-12-1787993825:47594670..47595034
part_of
exonPaHa12g16140.1-exon-12-1787993825:47595178..47595262
part_of
exonPaHa12g16140.1-exon-12-1787993825:47596249..47596637
part_of
exonPaHa12g16140.1-exon-12-1787993825:47596785..47596875
part_of
exonPaHa12g16140.1-exon-12-1787993825:47596954..47597236
part_of
exonPaHa12g16140.1-exon-12-1787993825:47598355..47598532
part_of
exonPaHa12g16140.1-exon-12-1787993825:47598990..47599193
part_of
exonPaHa12g16140.1-exon-12-1787993825:47599911..47599999
part_of
exonPaHa12g16140.1-exon-12-1787993825:47600108..47600247
part_of
exonPaHa12g16140.1-exon-12-1787993825:47600372..47600445
part_of
exonPaHa12g16140.1-exon-12-1787993825:47601928..47602076
part_of
exonPaHa12g16140.1-exon-12-1787993825:47602173..47602238
part_of
exonPaHa12g16140.1-exon-12-1787993825:47602335..47602401
part_of
exonPaHa12g16140.1-exon-12-1787993825:47603009..47603107
part_of
exonPaHa12g16140.1-exon-12-1787993825:47603192..47603295
part_of
exonPaHa12g16140.1-exon-12-1787993825:47605385..47605532
part_of
exonPaHa12g16140.1-exon-12-1787993825:47606152..47606232
part_of
exonPaHa12g16140.1-exon-12-1787993825:47606325..47606783
part_of
exonPaHa12g16140.1-exon-12-1787993825:47607344..47607667
part_of
exonPaHa12g16140.1-exon-12-1787993825:47608272..47608427
part_of
exonPaHa12g16140.1-exon-12-1787993825:47608566..47608571
part_of