Anise · gene

Chr01.g09364

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

15,152
bp
Chr01:94,879,771–94,894,922
genomic location
Record overview

Feature identity

Identifier
Chr01.g09364
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
15,152 bp
Genomic location
Chr01:94,879,771–94,894,922
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010264933.1,L,[Protein BREAST CANCER SUSCEPTIBILITY]
Gene Ontology
Protein BREAST CANCER SUSCEPTIBILITY | GO:0000724//double-strand break repair via homologous recombination; GO:0000725//recombinational repair; GO:0006139//nucleobase-containing compound metabolic process; GO:0006259//DNA metabolic process; GO:0006281//DNA repair; GO:0006302//double-strand break repair; GO:0006310//DNA recombination; GO:0006325//chromatin organization; GO:0006355//regulation of transcription, DNA-templated; GO:0006357//regulation of transcription from RNA polymerase II promoter; GO:0006464//cellular protein modification process; GO:0006479//protein methylation; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0006950//response to stress; GO:0006974//cellular response to DNA damage stimulus; GO:0006996//organelle organization; GO:0007275//multicellular organism development; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0008213//protein alkylation; GO:0009314//response to radiation; GO:0009628//response to abiotic stimulus; GO:0009653//anatomical structure morphogenesis; GO:0009888//tissue development; GO:0009889//regulation of biosynthetic process; GO:0009890//negative regulation of biosynthetic process; GO:0009891//positive regulation of biosynthetic process; GO:0009892//negative regulation of metabolic process; GO:0009893//positive regulation of metabolic process; GO:0009934//regulation of meristem structural organization; GO:0009987//cellular process; GO:0010015//root morphogenesis; GO:0010073//meristem maintenance; GO:0010074//maintenance of meristem identity; GO:0010078//maintenance of root meristem identity; GO:0010212//response to ionizing radiation; GO:0010332//response to gamma radiation; GO:0010468//regulation of gene expression; GO:0010492//maintenance of shoot apical meristem identity; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010557//positive regulation of macromolecule biosynthetic process; GO:0010558//negative regulation of macromolecule biosynthetic process; GO:0010564//regulation of cell cycle process; GO:0010565//regulation of cellular ketone metabolic process; GO:0010604//positive regulation of macromolecule metabolic process; GO:0010605//negative regulation of macromolecule metabolic process; GO:0010628//positive regulation of gene expression; GO:0010629//negative regulation of gene expression; GO:0010638//positive regulation of organelle organization; GO:0010639//negative regulation of organelle organization; GO:0016043//cellular component organization; GO:0016567//protein ubiquitination; GO:0016569//covalent chromatin modification; GO:0016570//histone modification; GO:0016571//histone methylation; GO:0018022//peptidyl-lysine methylation; GO:0018023//peptidyl-lysine trimethylation; GO:0018193//peptidyl-amino acid modification; GO:0018205//peptidyl-lysine modification; GO:0019216//regulation of lipid metabolic process; GO:0019217//regulation of fatty acid metabolic process; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0019538//protein metabolic process; GO:0019827//stem cell population maintenance; GO:0022603//regulation of anatomical structure morphogenesis; GO:0022607//cellular component assembly; GO:0022622//root system development; GO:0031056//regulation of histone modification; GO:0031057//negative regulation of histone modification; GO:0031058//positive regulation of histone modification; GO:0031323//regulation of cellular metabolic process; GO:0031324//negative regulation of cellular metabolic process; GO:0031325//positive regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031327//negative regulation of cellular biosynthetic process; GO:0031328//positive regulation of cellular biosynthetic process; GO:0031399//regulation of protein modification process; GO:0031400//negative regulation of protein modification process; GO:0031401//positive regulation of protein modification process; GO:0032259//methylation; GO:0032268//regulation of cellular protein metabolic process; GO:0032269//negative regulation of cellular protein metabolic process; GO:0032270//positive regulation of cellular protein metabolic process; GO:0032446//protein modification by small protein conjugation; GO:0032501//multicellular organismal process; GO:0032502//developmental process; GO:0033043//regulation of organelle organization; GO:0033044//regulation of chromosome organization; GO:0033554//cellular response to stress; GO:0034622//cellular macromolecular complex assembly; GO:0034641//cellular nitrogen compound metabolic process; GO:0034968//histone lysine methylation; GO:0035065//regulation of histone acetylation; GO:0035066//positive regulation of histone acetylation; GO:0035067//negative regulation of histone acetylation; GO:0036211//protein modification process; GO:0042127//regulation of cell proliferation; GO:0042304//regulation of fatty acid biosynthetic process; GO:0043170//macromolecule metabolic process; GO:0043412//macromolecule modification; GO:0043414//macromolecule methylation; GO:0043933//macromolecular complex subunit organization; GO:0044085//cellular component biogenesis; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044260//cellular macromolecule metabolic process; GO:0044267//cellular protein metabolic process; GO:0045717//negative regulation of fatty acid biosynthetic process; GO:0045787//positive regulation of cell cycle; GO:0045833//negative regulation of lipid metabolic process; GO:0045892//negative regulation of transcription, DNA-templated; GO:0045893//positive regulation of transcription, DNA-templated; GO:0045922//negative regulation of fatty acid metabolic process; GO:0045934//negative regulation of nucleobase-containing compound metabolic process; GO:0045935//positive regulation of nucleobase-containing compound metabolic process; GO:0045944//positive regulation of transcription from RNA polymerase II promoter; GO:0046483//heterocycle metabolic process; GO:0046890//regulation of lipid biosynthetic process; GO:0048364//root development; GO:0048366//leaf development; GO:0048367//shoot system development; GO:0048507//meristem development; GO:0048509//regulation of meristem development; GO:0048518//positive regulation of biological process; GO:0048519//negative regulation of biological process; GO:0048522//positive regulation of cellular process; GO:0048523//negative regulation of cellular process; GO:0048731//system development; GO:0048827//phyllome development; GO:0048856//anatomical structure development; GO:0050789//regulation of biological process; GO:0050793//regulation of developmental process; GO:0050794//regulation of cellular process; GO:0050896//response to stimulus; GO:0051055//negative regulation of lipid biosynthetic process; GO:0051128//regulation of cellular component organization; GO:0051129//negative regulation of cellular component organization; GO:0051130//positive regulation of cellular component organization; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051172//negative regulation of nitrogen compound metabolic process; GO:0051173//positive regulation of nitrogen compound metabolic process; GO:0051246//regulation of protein metabolic process; GO:0051247//positive regulation of protein metabolic process; GO:0051248//negative regulation of protein metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0051253//negative regulation of RNA metabolic process; GO:0051254//positive regulation of RNA metabolic process; GO:0051276//chromosome organization; GO:0051568//histone H3-K4 methylation; GO:0051716//cellular response to stimulus; GO:0051726//regulation of cell cycle; GO:0060255//regulation of macromolecule metabolic process; GO:0065003//macromolecular complex assembly; GO:0065004//protein-DNA complex assembly; GO:0065007//biological regulation; GO:0070647//protein modification by small protein conjugation or removal; GO:0071156//regulation of cell cycle arrest; GO:0071158//positive regulation of cell cycle arrest; GO:0071214//cellular response to abiotic stimulus; GO:0071478//cellular response to radiation; GO:0071479//cellular response to ionizing radiation; GO:0071480//cellular response to gamma radiation; GO:0071704//organic substance metabolic process; GO:0071824//protein-DNA complex subunit organization; GO:0071840//cellular component organization or biogenesis; GO:0080090//regulation of primary metabolic process; GO:0080182//histone H3-K4 trimethylation; GO:0090068//positive regulation of cell cycle process; GO:0090304//nucleic acid metabolic process; GO:0098727//maintenance of cell number; GO:0099402//plant organ development; GO:1901360//organic cyclic compound metabolic process; GO:1901564//organonitrogen compound metabolic process; GO:1901983//regulation of protein acetylation; GO:1901984//negative regulation of protein acetylation; GO:1901985//positive regulation of protein acetylation; GO:1902275//regulation of chromatin organization; GO:1902679//negative regulation of RNA biosynthetic process; GO:1902680//positive regulation of RNA biosynthetic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:1903507//negative regulation of nucleic acid-templated transcription; GO:1903508//positive regulation of nucleic acid-templated transcription; GO:1905268//negative regulation of chromatin organization; GO:1905269//positive regulation of chromatin organization; GO:1905392//plant organ morphogenesis; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2000113//negative regulation of cellular macromolecule biosynthetic process; GO:2000756//regulation of peptidyl-lysine acetylation; GO:2000757//negative regulation of peptidyl-lysine acetylation; GO:2000758//positive regulation of peptidyl-lysine acetylation; GO:2001141//regulation of RNA biosynthetic process; GO:2001251//negative regulation of chromosome organization; GO:2001252//positive regulation of chromosome organization | GO:0000151//ubiquitin ligase complex; GO:0000152//nuclear ubiquitin ligase complex; GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005886//plasma membrane; GO:0016020//membrane; GO:0031436//BRCA1-BARD1 complex; GO:0032991//macromolecular complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044428//nuclear part; GO:0044446//intracellular organelle part; GO:0044464//cell part; GO:0070531//BRCA1-A complex; GO:0071944//cell periphery; GO:1902494//catalytic complex; GO:1990234//transferase complex | GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0003824//catalytic activity; GO:0004842//ubiquitin-protein transferase activity; GO:0005488//binding; GO:0016740//transferase activity; GO:0019787//ubiquitin-like protein transferase activity; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
KEGG
K10683 | BARD1
NR
RWR81186.1 protein BREAST CANCER SUSCEPTIBILITY 1 isoform X2 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
F4I443.1 RecName: Full=BRCA1-associated RING domain protein 1; Short=AtBARD1; AltName: Full=Protein REPRESSOR OF WUSCHEL 1 [Arabidopsis thaliana]
Biological context

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