Anise · gene

Chr02.g13049

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

7,477
bp
Chr02:33,642,861–33,650,337
genomic location
Record overview

Feature identity

Identifier
Chr02.g13049
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
7,477 bp
Genomic location
Chr02:33,642,861–33,650,337
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
42345.XP_008791039.1,K,[Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)]
Gene Ontology
Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) | GO:0000003//reproduction; GO:0001101//response to acid chemical; GO:0003006//developmental process involved in reproduction; GO:0006355//regulation of transcription, DNA-templated; GO:0007275//multicellular organism development; GO:0007568//aging; GO:0008150//biological_process; GO:0008285//negative regulation of cell proliferation; GO:0009719//response to endogenous stimulus; GO:0009725//response to hormone; GO:0009737//response to abscisic acid; GO:0009791//post-embryonic development; GO:0009835//fruit ripening; GO:0009836//fruit ripening, climacteric; GO:0009838//abscission; GO:0009889//regulation of biosynthetic process; GO:0009890//negative regulation of biosynthetic process; GO:0009892//negative regulation of metabolic process; GO:0009900//dehiscence; GO:0009908//flower development; GO:0009909//regulation of flower development; GO:0009911//positive regulation of flower development; GO:0010033//response to organic substance; GO:0010047//fruit dehiscence; GO:0010150//leaf senescence; GO:0010154//fruit development; GO:0010227//floral organ abscission; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010558//negative regulation of macromolecule biosynthetic process; GO:0010605//negative regulation of macromolecule metabolic process; GO:0010629//negative regulation of gene expression; GO:0010959//regulation of metal ion transport; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0021700//developmental maturation; GO:0022414//reproductive process; GO:0031323//regulation of cellular metabolic process; GO:0031324//negative regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031327//negative regulation of cellular biosynthetic process; GO:0032501//multicellular organismal process; GO:0032502//developmental process; GO:0032504//multicellular organism reproduction; GO:0032879//regulation of localization; GO:0033993//response to lipid; GO:0034762//regulation of transmembrane transport; GO:0034764//positive regulation of transmembrane transport; GO:0034765//regulation of ion transmembrane transport; GO:0034767//positive regulation of ion transmembrane transport; GO:0035670//plant-type ovary development; GO:0042127//regulation of cell proliferation; GO:0042221//response to chemical; GO:0043266//regulation of potassium ion transport; GO:0043268//positive regulation of potassium ion transport; GO:0043269//regulation of ion transport; GO:0043270//positive regulation of ion transport; GO:0045892//negative regulation of transcription, DNA-templated; GO:0045934//negative regulation of nucleobase-containing compound metabolic process; GO:0048366//leaf development; GO:0048367//shoot system development; GO:0048437//floral organ development; GO:0048438//floral whorl development; GO:0048440//carpel development; GO:0048467//gynoecium development; GO:0048481//plant ovule development; GO:0048518//positive regulation of biological process; GO:0048519//negative regulation of biological process; GO:0048522//positive regulation of cellular process; GO:0048523//negative regulation of cellular process; GO:0048580//regulation of post-embryonic development; GO:0048582//positive regulation of post-embryonic development; GO:0048608//reproductive structure development; GO:0048609//multicellular organismal reproductive process; GO:0048731//system development; GO:0048827//phyllome development; GO:0048831//regulation of shoot system development; GO:0048856//anatomical structure development; GO:0050789//regulation of biological process; GO:0050793//regulation of developmental process; GO:0050794//regulation of cellular process; GO:0050896//response to stimulus; GO:0051049//regulation of transport; GO:0051050//positive regulation of transport; GO:0051094//positive regulation of developmental process; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051172//negative regulation of nitrogen compound metabolic process; GO:0051239//regulation of multicellular organismal process; GO:0051240//positive regulation of multicellular organismal process; GO:0051252//regulation of RNA metabolic process; GO:0051253//negative regulation of RNA metabolic process; GO:0060255//regulation of macromolecule metabolic process; GO:0061458//reproductive system development; GO:0065007//biological regulation; GO:0071695//anatomical structure maturation; GO:0080090//regulation of primary metabolic process; GO:0090567//reproductive shoot system development; GO:0090693//plant organ senescence; GO:0097305//response to alcohol; GO:0099402//plant organ development; GO:1901379//regulation of potassium ion transmembrane transport; GO:1901381//positive regulation of potassium ion transmembrane transport; GO:1901700//response to oxygen-containing compound; GO:1902679//negative regulation of RNA biosynthetic process; GO:1903286//regulation of potassium ion import; GO:1903288//positive regulation of potassium ion import; GO:1903506//regulation of nucleic acid-templated transcription; GO:1903507//negative regulation of nucleic acid-templated transcription; GO:1904062//regulation of cation transmembrane transport; GO:1904064//positive regulation of cation transmembrane transport; GO:2000026//regulation of multicellular organismal development; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2000113//negative regulation of cellular macromolecule biosynthetic process; GO:2000241//regulation of reproductive process; GO:2000243//positive regulation of reproductive process; GO:2001141//regulation of RNA biosynthetic process | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0044424//intracellular part; GO:0044464//cell part | GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0003700//transcription factor activity, sequence-specific DNA binding; GO:0005488//binding; GO:0005515//protein binding; GO:0042802//identical protein binding; GO:0042803//protein homodimerization activity; GO:0043565//sequence-specific DNA binding; GO:0046982//protein heterodimerization activity; GO:0046983//protein dimerization activity; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
NR
RWR86935.1 AUX/IAA protein [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
K4DF01.1 RecName: Full=Auxin response factor 2B; Short=SlARF2B [Solanum lycopersicum]
Biological context

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