Feature identity
- Identifier
- PaHa12g12190.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,662 bp
- Genomic location
- 12:39,839,597–39,856,703
- Strand
- +
Hass · mRNA
PaHa12g12190.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,662
- bp
- 12:39,839,597–39,856,703
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa12g12190
- eggNOG
- Preferred name: LOC104603972 | Seed ortholog: 337451.A0A443Q0G4 | COG: COG0568 | eggNOG OG: Sigma70_r2@131567|AQM-18!, Sigma70_r2@33090|NGl-29, Sigma70_r3@131567|C-2!, Sigma70_r3@3193|b-5, Sigma70_r4@131567|Bnn-30
- Gene Ontology
- GO:0003899 DNA-directed RNA polymerase activity; GO:0005515 protein binding; GO:0005739 mitochondrion; GO:0006352 DNA-templated transcription initiation; GO:0009507 chloroplast; GO:0009536 plastid; GO:0009553 embryo sac development; GO:0009658 chloroplast organization; GO:0010114 response to red light; GO:0010207 photosystem II assembly; GO:0010218 response to far red light; GO:0016987 sigma factor activity; GO:0045893 positive regulation of DNA-templated transcription; GO:0071472 cellular response to salt stress; GO:0071483 cellular response to blue light; GO:2001141 regulation of RNA biosynthetic process
- KEGG
- KO: K03093 | BRITE: 00001, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa12g12190.1-protein
derives_frommRNAPaHa12g12190.1
mRNAPaHa12g12190.1
part_ofgenePaHa12g12190
CDS
part_ofPaHa12g12190.1-CDS-12-1787993825:39839597..39839643mRNAPaHa12g12190.1
CDS
part_ofPaHa12g12190.1-CDS-12-1787993825:39843900..39843940mRNAPaHa12g12190.1
CDS
part_ofPaHa12g12190.1-CDS-12-1787993825:39844750..39845504mRNAPaHa12g12190.1
CDS
part_ofPaHa12g12190.1-CDS-12-1787993825:39846351..39846497mRNAPaHa12g12190.1
CDS
part_ofPaHa12g12190.1-CDS-12-1787993825:39847613..39847670mRNAPaHa12g12190.1
CDS
part_ofPaHa12g12190.1-CDS-12-1787993825:39847757..39847769mRNAPaHa12g12190.1
CDS
part_ofPaHa12g12190.1-CDS-12-1787993825:39849670..39849745mRNAPaHa12g12190.1
CDS
part_ofPaHa12g12190.1-CDS-12-1787993825:39849851..39849959mRNAPaHa12g12190.1
CDS
part_ofPaHa12g12190.1-CDS-12-1787993825:39850783..39850895mRNAPaHa12g12190.1
CDS
part_ofPaHa12g12190.1-CDS-12-1787993825:39851565..39851623mRNAPaHa12g12190.1
CDS
part_ofPaHa12g12190.1-CDS-12-1787993825:39855205..39855313mRNAPaHa12g12190.1
CDS
part_ofPaHa12g12190.1-CDS-12-1787993825:39856569..39856703mRNAPaHa12g12190.1
exon
part_ofPaHa12g12190.1-exon-12-1787993825:39839597..39839643mRNAPaHa12g12190.1
exon
part_ofPaHa12g12190.1-exon-12-1787993825:39843900..39843940mRNAPaHa12g12190.1
exon
part_ofPaHa12g12190.1-exon-12-1787993825:39844750..39845504mRNAPaHa12g12190.1
exon
part_ofPaHa12g12190.1-exon-12-1787993825:39846351..39846497mRNAPaHa12g12190.1
exon
part_ofPaHa12g12190.1-exon-12-1787993825:39847613..39847670mRNAPaHa12g12190.1
exon
part_ofPaHa12g12190.1-exon-12-1787993825:39847757..39847769mRNAPaHa12g12190.1
exon
part_ofPaHa12g12190.1-exon-12-1787993825:39849670..39849745mRNAPaHa12g12190.1
exon
part_ofPaHa12g12190.1-exon-12-1787993825:39849851..39849959mRNAPaHa12g12190.1
exon
part_ofPaHa12g12190.1-exon-12-1787993825:39850783..39850895mRNAPaHa12g12190.1
exon
part_ofPaHa12g12190.1-exon-12-1787993825:39851565..39851623mRNAPaHa12g12190.1
exon
part_ofPaHa12g12190.1-exon-12-1787993825:39855205..39855313mRNAPaHa12g12190.1
exon
part_ofPaHa12g12190.1-exon-12-1787993825:39856569..39856703mRNAPaHa12g12190.1
