Anise · gene

Chr03.g25987

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

14,432
bp
Chr03:56,398,434–56,412,865
genomic location
Record overview

Feature identity

Identifier
Chr03.g25987
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
14,432 bp
Genomic location
Chr03:56,398,434–56,412,865
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
3750.XP_008386987.1,A,[isoform X1]
Gene Ontology
isoform X1 | GO:0000375//RNA splicing, via transesterification reactions; GO:0000377//RNA splicing, via transesterification reactions with bulged adenosine as nucleophile; GO:0000398//mRNA splicing, via spliceosome; GO:0006139//nucleobase-containing compound metabolic process; GO:0006351//transcription, DNA-templated; GO:0006353//DNA-templated transcription, termination; GO:0006366//transcription from RNA polymerase II promoter; GO:0006369//termination of RNA polymerase II transcription; GO:0006378//mRNA polyadenylation; GO:0006379//mRNA cleavage; GO:0006396//RNA processing; GO:0006397//mRNA processing; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0008380//RNA splicing; GO:0009058//biosynthetic process; GO:0009059//macromolecule biosynthetic process; GO:0009987//cellular process; GO:0010467//gene expression; GO:0016070//RNA metabolic process; GO:0016071//mRNA metabolic process; GO:0018130//heterocycle biosynthetic process; GO:0019438//aromatic compound biosynthetic process; GO:0031123//RNA 3'-end processing; GO:0031124//mRNA 3'-end processing; GO:0032774//RNA biosynthetic process; GO:0034641//cellular nitrogen compound metabolic process; GO:0034645//cellular macromolecule biosynthetic process; GO:0034654//nucleobase-containing compound biosynthetic process; GO:0043170//macromolecule metabolic process; GO:0043631//RNA polyadenylation; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044249//cellular biosynthetic process; GO:0044260//cellular macromolecule metabolic process; GO:0044271//cellular nitrogen compound biosynthetic process; GO:0046483//heterocycle metabolic process; GO:0071704//organic substance metabolic process; GO:0090304//nucleic acid metabolic process; GO:0090305//nucleic acid phosphodiester bond hydrolysis; GO:0090501//RNA phosphodiester bond hydrolysis; GO:0097659//nucleic acid-templated transcription; GO:1901360//organic cyclic compound metabolic process; GO:1901362//organic cyclic compound biosynthetic process; GO:1901576//organic substance biosynthetic process | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005654//nucleoplasm; GO:0005737//cytoplasm; GO:0005739//mitochondrion; GO:0005849//mRNA cleavage factor complex; GO:0031974//membrane-enclosed lumen; GO:0031981//nuclear lumen; GO:0032991//macromolecular complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043233//organelle lumen; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044428//nuclear part; GO:0044444//cytoplasmic part; GO:0044446//intracellular organelle part; GO:0044451//nucleoplasm part; GO:0044464//cell part; GO:0070013//intracellular organelle lumen | GO:0000993//RNA polymerase II core binding; GO:0001098//basal transcription machinery binding; GO:0001099//basal RNA polymerase II transcription machinery binding; GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003723//RNA binding; GO:0003729//mRNA binding; GO:0005488//binding; GO:0005515//protein binding; GO:0019899//enzyme binding; GO:0043175//RNA polymerase core enzyme binding; GO:0044877//macromolecular complex binding; GO:0070063//RNA polymerase binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
NR
KAA8524269.1 hypothetical protein F0562_010692 [Nyssa sinensis]
Swiss-Prot
Q94HW2.1 RecName: Full=Retrovirus-related Pol polyprotein from transposon RE1; AltName: Full=Retro element 1; Short=AtRE1; Includes: RecName: Full=Protease RE1; Includes: RecName: Full=Reverse transcriptase RE1; Includes: RecName: Full=Endonuclease RE1 [Arabidopsis thaliana]
Biological context

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