Feature identity
- Identifier
- PaHa12g10930.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,898 bp
- Genomic location
- 12:37,283,217–37,298,549
- Strand
- +
Hass · mRNA
PaHa12g10930.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,898
- bp
- 12:37,283,217–37,298,549
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa12g10930
- eggNOG
- Preferred name: LOC123049086 | Seed ortholog: 337451.A0A3S3R9R8 | COG: S | eggNOG OG: DUF608@131567|A-1, DUF608@3193|Gx-12, Glyco_hydr_116N@131567|A-1, Glyco_hydr_116N@3193|Gq-14
- Gene Ontology
- GO:0000139 Golgi membrane; GO:0004348 glucosylceramidase activity; GO:0005789 endoplasmic reticulum membrane; GO:0005790 smooth endoplasmic reticulum; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006678 glucosylceramide metabolic process; GO:0006680 glucosylceramide catabolic process; GO:0007409 axonogenesis; GO:0007417 central nervous system development; GO:0008203 cholesterol metabolic process; GO:0008206 bile acid metabolic process; GO:0008422 beta-glucosidase activity; GO:0009247 glycolipid biosynthetic process; GO:0016020 membrane; GO:0016139 glycoside catabolic process; GO:0021954 central nervous system neuron development; GO:0030833 regulation of actin filament polymerization; GO:0031113 regulation of microtubule polymerization; GO:0046479 glycosphingolipid catabolic process; GO:0046527 glucosyltransferase activity; GO:0050295 steryl-beta-glucosidase activity; GO:0097035 regulation of membrane lipid distribution
- KEGG
- EC: ec:3.2.1.45 | KO: K17108 | Pathway: 00511, 00600, 01100 | BRITE: 00001, 01000 | CAZy: GH116|Glycoside Hydrolase Family 116.
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa12g10930.1-protein
derives_frommRNAPaHa12g10930.1
mRNAPaHa12g10930.1
part_ofgenePaHa12g10930
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37283217..37283297mRNAPaHa12g10930.1
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37285177..37285287mRNAPaHa12g10930.1
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37285444..37285500mRNAPaHa12g10930.1
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37285619..37285695mRNAPaHa12g10930.1
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37285784..37285883mRNAPaHa12g10930.1
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37288914..37288987mRNAPaHa12g10930.1
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37289135..37289235mRNAPaHa12g10930.1
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37289369..37289472mRNAPaHa12g10930.1
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37292353..37292406mRNAPaHa12g10930.1
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37292502..37292557mRNAPaHa12g10930.1
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37292642..37292680mRNAPaHa12g10930.1
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37293065..37293206mRNAPaHa12g10930.1
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37293580..37293764mRNAPaHa12g10930.1
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37294733..37294800mRNAPaHa12g10930.1
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37294921..37294993mRNAPaHa12g10930.1
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37295359..37295420mRNAPaHa12g10930.1
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37295743..37296997mRNAPaHa12g10930.1
CDS
part_ofPaHa12g10930.1-CDS-12-1787993825:37298291..37298549mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37283217..37283297mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37285177..37285287mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37285444..37285500mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37285619..37285695mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37285784..37285883mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37288914..37288987mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37289135..37289235mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37289369..37289472mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37292353..37292406mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37292502..37292557mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37292642..37292680mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37293065..37293206mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37293580..37293764mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37294733..37294800mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37294921..37294993mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37295359..37295420mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37295743..37296997mRNAPaHa12g10930.1
exon
part_ofPaHa12g10930.1-exon-12-1787993825:37298291..37298549mRNAPaHa12g10930.1
