PaHa12g10680.1

Record overview

Feature identity

Identifier: PaHa12g10680.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 732 bp
Genomic location: 12:36,902,535–36,907,494
Strand: +

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa12g10680

eggNOG: Preferred name: LOC103716825 | Seed ortholog: 337451.A0A3S3R7S2 | COG: S | eggNOG OG: TAFII55_N@2759|A-1
Gene Ontology: GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000296 spermine transport; GO:0000976 transcription cis-regulatory region binding; GO:0001097 TFIIH-class transcription factor complex binding; GO:0003674 molecular_function; GO:0003713 transcription coactivator activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006282 regulation of DNA repair; GO:0006352 DNA-templated transcription initiation; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006366 transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0006469 negative regulation of protein kinase activity; GO:0007286 spermatid development; GO:0008150 biological_process; GO:0016251 RNA polymerase II general transcription initiation factor activity; GO:0030317 flagellated sperm motility; GO:0030520 estrogen receptor signaling pathway; GO:0035034 histone acetyltransferase regulator activity; GO:0035035 histone acetyltransferase binding; GO:0042789 mRNA transcription by RNA polymerase II; GO:0042809 nuclear vitamin D receptor binding; GO:0045344 negative regulation of MHC class I biosynthetic process; GO:0045347 negative regulation of MHC class II biosynthetic process; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0046966 nuclear thyroid hormone receptor binding; GO:0046982 protein heterodimerization activity; GO:0051123 RNA polymerase II preinitiation complex assembly; GO:0060261 positive regulation of transcription initiation by RNA polymerase II; GO:0061628 histone H3K27me3 reader activity; GO:0106140 P-TEFb complex binding; GO:0140297 DNA-binding transcription factor binding
KEGG: EC: ec:1.14.11.73 | KO: K03132 | Pathway: 03022 | BRITE: 00001, 03021, 03036

Feature identity

Functional evidence

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