Anise · gene

Chr03.g28064

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

9,585
bp
Chr03:80,541,910–80,551,494
genomic location
Record overview

Feature identity

Identifier
Chr03.g28064
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
9,585 bp
Genomic location
Chr03:80,541,910–80,551,494
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010263476.1,A,[E3 ubiquitin ligase SUD1]
Gene Ontology
E3 ubiquitin ligase SUD1 | GO:0000209//protein polyubiquitination; GO:0001101//response to acid chemical; GO:0006464//cellular protein modification process; GO:0006508//proteolysis; GO:0006511//ubiquitin-dependent protein catabolic process; GO:0006629//lipid metabolic process; GO:0006720//isoprenoid metabolic process; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0006950//response to stress; GO:0007275//multicellular organism development; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0008299//isoprenoid biosynthetic process; GO:0008610//lipid biosynthetic process; GO:0009056//catabolic process; GO:0009057//macromolecule catabolic process; GO:0009058//biosynthetic process; GO:0009059//macromolecule biosynthetic process; GO:0009414//response to water deprivation; GO:0009415//response to water; GO:0009628//response to abiotic stimulus; GO:0009698//phenylpropanoid metabolic process; GO:0009699//phenylpropanoid biosynthetic process; GO:0009893//positive regulation of metabolic process; GO:0009987//cellular process; GO:0010025//wax biosynthetic process; GO:0010033//response to organic substance; GO:0010035//response to inorganic substance; GO:0010143//cutin biosynthetic process; GO:0010166//wax metabolic process; GO:0010243//response to organonitrogen compound; GO:0010345//suberin biosynthetic process; GO:0010498//proteasomal protein catabolic process; GO:0016567//protein ubiquitination; GO:0019222//regulation of metabolic process; GO:0019438//aromatic compound biosynthetic process; GO:0019538//protein metabolic process; GO:0019748//secondary metabolic process; GO:0019941//modification-dependent protein catabolic process; GO:0030163//protein catabolic process; GO:0030433//ubiquitin-dependent ERAD pathway; GO:0032446//protein modification by small protein conjugation; GO:0032501//multicellular organismal process; GO:0032502//developmental process; GO:0033554//cellular response to stress; GO:0034976//response to endoplasmic reticulum stress; GO:0036211//protein modification process; GO:0036503//ERAD pathway; GO:0042221//response to chemical; GO:0042335//cuticle development; GO:0043085//positive regulation of catalytic activity; GO:0043161//proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0043170//macromolecule metabolic process; GO:0043412//macromolecule modification; GO:0043632//modification-dependent macromolecule catabolic process; GO:0044093//positive regulation of molecular function; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044248//cellular catabolic process; GO:0044249//cellular biosynthetic process; GO:0044255//cellular lipid metabolic process; GO:0044257//cellular protein catabolic process; GO:0044260//cellular macromolecule metabolic process; GO:0044265//cellular macromolecule catabolic process; GO:0044267//cellular protein metabolic process; GO:0044550//secondary metabolite biosynthetic process; GO:0048518//positive regulation of biological process; GO:0048856//anatomical structure development; GO:0050789//regulation of biological process; GO:0050790//regulation of catalytic activity; GO:0050896//response to stimulus; GO:0051341//regulation of oxidoreductase activity; GO:0051353//positive regulation of oxidoreductase activity; GO:0051603//proteolysis involved in cellular protein catabolic process; GO:0051716//cellular response to stimulus; GO:0065007//biological regulation; GO:0065009//regulation of molecular function; GO:0070647//protein modification by small protein conjugation or removal; GO:0070936//protein K48-linked ubiquitination; GO:0071704//organic substance metabolic process; GO:1900490//positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity; GO:1901360//organic cyclic compound metabolic process; GO:1901362//organic cyclic compound biosynthetic process; GO:1901564//organonitrogen compound metabolic process; GO:1901565//organonitrogen compound catabolic process; GO:1901568//fatty acid derivative metabolic process; GO:1901570//fatty acid derivative biosynthetic process; GO:1901575//organic substance catabolic process; GO:1901576//organic substance biosynthetic process; GO:1901698//response to nitrogen compound; GO:1901700//response to oxygen-containing compound; GO:2001215//regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005737//cytoplasm; GO:0005783//endoplasmic reticulum; GO:0005789//endoplasmic reticulum membrane; GO:0012505//endomembrane system; GO:0016020//membrane; GO:0016021//integral component of membrane; GO:0030176//integral component of endoplasmic reticulum membrane; GO:0031224//intrinsic component of membrane; GO:0031227//intrinsic component of endoplasmic reticulum membrane; GO:0031984//organelle subcompartment; GO:0042175//nuclear outer membrane-endoplasmic reticulum membrane network; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044425//membrane part; GO:0044432//endoplasmic reticulum part; GO:0044444//cytoplasmic part; GO:0044446//intracellular organelle part; GO:0044464//cell part; GO:0098827//endoplasmic reticulum subcompartment | GO:0002020//protease binding; GO:0003674//molecular_function; GO:0003824//catalytic activity; GO:0004842//ubiquitin-protein transferase activity; GO:0005488//binding; GO:0005515//protein binding; GO:0016740//transferase activity; GO:0019787//ubiquitin-like protein transferase activity; GO:0019899//enzyme binding; GO:0031624//ubiquitin conjugating enzyme binding; GO:0044390//ubiquitin-like protein conjugating enzyme binding; GO:1990381//ubiquitin-specific protease binding
KEGG
K10661 | MARCH6, DOA10
NR
RWR77573.1 putative E3 ubiquitin ligase SUD1 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
F4JKK0.1 RecName: Full=Probable E3 ubiquitin ligase SUD1; AltName: Full=Protein ECERIFERUM 9; AltName: Full=Protein SUPPRESSOR OF DRY2 DEFFECTS 1; Short=AtSUD1; AltName: Full=RING-type E3 ubiquitin transferase SUD1; AltName: Full=RING/U-box domain-containing protein [Arabidopsis thaliana]
Biological context

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