Anise · gene

Chr03.g29218

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

4,864
bp
Chr03:94,054,035–94,058,898
genomic location
Record overview

Feature identity

Identifier
Chr03.g29218
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
4,864 bp
Genomic location
Chr03:94,054,035–94,058,898
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010273572.1,K,[mediator of RNA polymerase II transcription subunit]
Gene Ontology
mediator of RNA polymerase II transcription subunit | GO:0000003//reproduction; GO:0000414//regulation of histone H3-K36 methylation; GO:0001101//response to acid chemical; GO:0002831//regulation of response to biotic stimulus; GO:0003002//regionalization; GO:0003006//developmental process involved in reproduction; GO:0006139//nucleobase-containing compound metabolic process; GO:0006351//transcription, DNA-templated; GO:0006353//DNA-templated transcription, termination; GO:0006355//regulation of transcription, DNA-templated; GO:0006366//transcription from RNA polymerase II promoter; GO:0006369//termination of RNA polymerase II transcription; GO:0006396//RNA processing; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0007275//multicellular organism development; GO:0007389//pattern specification process; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009058//biosynthetic process; GO:0009059//macromolecule biosynthetic process; GO:0009719//response to endogenous stimulus; GO:0009723//response to ethylene; GO:0009725//response to hormone; GO:0009737//response to abscisic acid; GO:0009791//post-embryonic development; GO:0009889//regulation of biosynthetic process; GO:0009890//negative regulation of biosynthetic process; GO:0009892//negative regulation of metabolic process; GO:0009908//flower development; GO:0009966//regulation of signal transduction; GO:0009987//cellular process; GO:0010033//response to organic substance; GO:0010219//regulation of vernalization response; GO:0010467//gene expression; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010558//negative regulation of macromolecule biosynthetic process; GO:0010605//negative regulation of macromolecule metabolic process; GO:0010608//posttranscriptional regulation of gene expression; GO:0010629//negative regulation of gene expression; GO:0010646//regulation of cell communication; GO:0014070//response to organic cyclic compound; GO:0016070//RNA metabolic process; GO:0016441//posttranscriptional gene silencing; GO:0016458//gene silencing; GO:0018130//heterocycle biosynthetic process; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0019438//aromatic compound biosynthetic process; GO:0022414//reproductive process; GO:0023051//regulation of signaling; GO:0031047//gene silencing by RNA; GO:0031050//dsRNA fragmentation; GO:0031056//regulation of histone modification; GO:0031060//regulation of histone methylation; GO:0031323//regulation of cellular metabolic process; GO:0031324//negative regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031327//negative regulation of cellular biosynthetic process; GO:0031347//regulation of defense response; GO:0031399//regulation of protein modification process; GO:0031554//regulation of DNA-templated transcription, termination; GO:0032101//regulation of response to external stimulus; GO:0032268//regulation of cellular protein metabolic process; GO:0032501//multicellular organismal process; GO:0032502//developmental process; GO:0032774//RNA biosynthetic process; GO:0032784//regulation of DNA-templated transcription, elongation; GO:0033043//regulation of organelle organization; GO:0033044//regulation of chromosome organization; GO:0033993//response to lipid; GO:0034641//cellular nitrogen compound metabolic process; GO:0034645//cellular macromolecule biosynthetic process; GO:0034654//nucleobase-containing compound biosynthetic process; GO:0035194//posttranscriptional gene silencing by RNA; GO:0035195//gene silencing by miRNA; GO:0035196//production of miRNAs involved in gene silencing by miRNA; GO:0040029//regulation of gene expression, epigenetic; GO:0040034//regulation of development, heterochronic; GO:0042221//response to chemical; GO:0043170//macromolecule metabolic process; GO:0043244//regulation of protein complex disassembly; GO:0043254//regulation of protein complex assembly; GO:0043331//response to dsRNA; GO:0043900//regulation of multi-organism process; GO:0044087//regulation of cellular component biogenesis; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044249//cellular biosynthetic process; GO:0044260//cellular macromolecule metabolic process; GO:0044271//cellular nitrogen compound biosynthetic process; GO:0045892//negative regulation of transcription, DNA-templated; GO:0045934//negative regulation of nucleobase-containing compound metabolic process; GO:0046483//heterocycle metabolic process; GO:0048367//shoot system development; GO:0048437//floral organ development; GO:0048438//floral whorl development; GO:0048440//carpel development; GO:0048441//petal development; GO:0048442//sepal development; GO:0048443//stamen development; GO:0048464//flower calyx development; GO:0048465//corolla development; GO:0048466//androecium development; GO:0048467//gynoecium development; GO:0048506//regulation of timing of meristematic phase transition; GO:0048509//regulation of meristem development; GO:0048510//regulation of timing of transition from vegetative to reproductive phase; GO:0048519//negative regulation of biological process; GO:0048523//negative regulation of cellular process; GO:0048580//regulation of post-embryonic development; GO:0048583//regulation of response to stimulus; GO:0048608//reproductive structure development; GO:0048731//system development; GO:0048827//phyllome development; GO:0048832//specification of plant organ number; GO:0048833//specification of floral organ number; GO:0048856//anatomical structure development; GO:0050789//regulation of biological process; GO:0050793//regulation of developmental process; GO:0050794//regulation of cellular process; GO:0050896//response to stimulus; GO:0051128//regulation of cellular component organization; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051172//negative regulation of nitrogen compound metabolic process; GO:0051239//regulation of multicellular organismal process; GO:0051246//regulation of protein metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0051253//negative regulation of RNA metabolic process; GO:0051716//cellular response to stimulus; GO:0060255//regulation of macromolecule metabolic process; GO:0061458//reproductive system development; GO:0065007//biological regulation; GO:0070887//cellular response to chemical stimulus; GO:0070918//production of small RNA involved in gene silencing by RNA; GO:0071310//cellular response to organic substance; GO:0071359//cellular response to dsRNA; GO:0071407//cellular response to organic cyclic compound; GO:0071704//organic substance metabolic process; GO:0080090//regulation of primary metabolic process; GO:0080134//regulation of response to stress; GO:0090304//nucleic acid metabolic process; GO:0090567//reproductive shoot system development; GO:0097305//response to alcohol; GO:0097659//nucleic acid-templated transcription; GO:0099402//plant organ development; GO:1900150//regulation of defense response to fungus; GO:1901360//organic cyclic compound metabolic process; GO:1901362//organic cyclic compound biosynthetic process; GO:1901576//organic substance biosynthetic process; GO:1901698//response to nitrogen compound; GO:1901699//cellular response to nitrogen compound; GO:1901700//response to oxygen-containing compound; GO:1902275//regulation of chromatin organization; GO:1902679//negative regulation of RNA biosynthetic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:1903507//negative regulation of nucleic acid-templated transcription; GO:2000026//regulation of multicellular organismal development; GO:2000028//regulation of photoperiodism, flowering; GO:2000031//regulation of salicylic acid mediated signaling pathway; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2000113//negative regulation of cellular macromolecule biosynthetic process; GO:2000142//regulation of DNA-templated transcription, initiation; GO:2000241//regulation of reproductive process; GO:2001023//regulation of response to drug; GO:2001038//regulation of cellular response to drug; GO:2001141//regulation of RNA biosynthetic process; GO:2001253//regulation of histone H3-K36 trimethylation | GO:0000428//DNA-directed RNA polymerase complex; GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005654//nucleoplasm; GO:0005667//transcription factor complex; GO:0016591//DNA-directed RNA polymerase II, holoenzyme; GO:0016592//mediator complex; GO:0030880//RNA polymerase complex; GO:0031974//membrane-enclosed lumen; GO:0031981//nuclear lumen; GO:0032991//macromolecular complex; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043233//organelle lumen; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044428//nuclear part; GO:0044446//intracellular organelle part; GO:0044451//nucleoplasm part; GO:0044464//cell part; GO:0044798//nuclear transcription factor complex; GO:0055029//nuclear DNA-directed RNA polymerase complex; GO:0061695//transferase complex, transferring phosphorus-containing groups; GO:0070013//intracellular organelle lumen; GO:0070847//core mediator complex; GO:0090575//RNA polymerase II transcription factor complex; GO:1902494//catalytic complex; GO:1990234//transferase complex | GO:0003674//molecular_function; GO:0003712//transcription cofactor activity
KEGG
K15135 | MED18
NR
RWR78314.1 mediator of RNA polymerase II transcription subunit 18 [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
Q9SJZ6.1 RecName: Full=Mediator of RNA polymerase II transcription subunit 18 [Arabidopsis thaliana]
Biological context

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