Feature identity
- Identifier
- PaHa01g33860.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 648 bp
- Genomic location
- 1:84,127,284–84,159,131
- Strand
- −
Hass · mRNA
PaHa01g33860.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 648
- bp
- 1:84,127,284–84,159,131
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g33860
- eggNOG
- Preferred name: MADS50 | Seed ortholog: 337451.A0A3S3MWM9 | COG: S | eggNOG OG: K-box@131221|AA-6, K-box@131567|A-1*, K-box@2759|O-4, K-box@3398|HO-11!, SRF-TF@131567|A-1*, SRF-TF@1437183|Djk-33, SRF-TF@2759|C-2!, SRF-TF@3398|BYA-27
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0010048 vernalization response; GO:0010076 maintenance of floral meristem identity; GO:0010082 regulation of root meristem growth; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0048510 regulation of timing of transition from vegetative to reproductive phase; GO:2000012 regulation of auxin polar transport
- KEGG
- KO: K04378, K04454, K09260, K09261, K09262, K09264, K09265, K12412, K19807, K19808, K27808 | Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 | BRITE: 00001, 03000, 03021, 04131
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g33860.1-protein
derives_frommRNAPaHa01g33860.1
mRNAPaHa01g33860.1
part_ofgenePaHa01g33860
CDS
part_ofPaHa01g33860.1-CDS-1-1787993825:84127284..84127421mRNAPaHa01g33860.1
CDS
part_ofPaHa01g33860.1-CDS-1-1787993825:84127503..84127544mRNAPaHa01g33860.1
CDS
part_ofPaHa01g33860.1-CDS-1-1787993825:84127633..84127674mRNAPaHa01g33860.1
CDS
part_ofPaHa01g33860.1-CDS-1-1787993825:84127765..84127864mRNAPaHa01g33860.1
CDS
part_ofPaHa01g33860.1-CDS-1-1787993825:84128002..84128063mRNAPaHa01g33860.1
CDS
part_ofPaHa01g33860.1-CDS-1-1787993825:84135248..84135329mRNAPaHa01g33860.1
CDS
part_ofPaHa01g33860.1-CDS-1-1787993825:84158950..84159131mRNAPaHa01g33860.1
exon
part_ofPaHa01g33860.1-exon-1-1787993825:84127284..84127421mRNAPaHa01g33860.1
exon
part_ofPaHa01g33860.1-exon-1-1787993825:84127503..84127544mRNAPaHa01g33860.1
exon
part_ofPaHa01g33860.1-exon-1-1787993825:84127633..84127674mRNAPaHa01g33860.1
exon
part_ofPaHa01g33860.1-exon-1-1787993825:84127765..84127864mRNAPaHa01g33860.1
exon
part_ofPaHa01g33860.1-exon-1-1787993825:84128002..84128063mRNAPaHa01g33860.1
exon
part_ofPaHa01g33860.1-exon-1-1787993825:84135248..84135329mRNAPaHa01g33860.1
exon
part_ofPaHa01g33860.1-exon-1-1787993825:84158950..84159131mRNAPaHa01g33860.1
