Feature identity
- Identifier
- PaHa12g07080.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 3,180 bp
- Genomic location
- 12:28,833,227–28,875,696
- Strand
- +
Hass · mRNA
PaHa12g07080.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 3,180
- bp
- 12:28,833,227–28,875,696
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa12g07080
- eggNOG
- Preferred name: LOC104593391 | Seed ortholog: 337451.A0A3S3NYF1 | COG: COG0442 | eggNOG OG: HGTP_anticodon@131567|Ab-7, ProRS-C_1@131567|A-1, tRNA-synt_2b@131567|F-3
- Gene Ontology
- GO:0002181 cytoplasmic translation; GO:0004827 proline-tRNA ligase activity; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006418 tRNA aminoacylation for protein translation; GO:0006424 glutamyl-tRNA aminoacylation; GO:0006433 prolyl-tRNA aminoacylation; GO:0009506 plasmodesma; GO:0017148 negative regulation of translation; GO:0032869 cellular response to insulin stimulus; GO:0071346 cellular response to type II interferon; GO:0097308 cellular response to farnesol; GO:0140212 regulation of long-chain fatty acid import into cell; GO:1901194 negative regulation of formation of translation preinitiation complex
- KEGG
- EC: ec:6.1.1.15 | KO: K01881 | Pathway: 00970 | BRITE: 00001, 01000, 01007, 01613, 03016
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa12g07080.1-protein
derives_frommRNAPaHa12g07080.1
mRNAPaHa12g07080.1
part_ofgenePaHa12g07080
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28833227..28834309mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28841344..28841533mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28842308..28842453mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28842939..28843006mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28843431..28843533mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28844741..28844827mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28851193..28851244mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28851795..28851881mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28851971..28852053mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28852245..28852337mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28852682..28852798mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28858588..28858775mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28859434..28859500mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28871834..28871956mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28872033..28872185mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28872898..28872934mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28873058..28873182mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28874175..28874393mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28875440..28875533mRNAPaHa12g07080.1
CDS
part_ofPaHa12g07080.1-CDS-12-1787993825:28875632..28875696mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28833227..28834309mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28841344..28841533mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28842308..28842453mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28842939..28843006mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28843431..28843533mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28844741..28844827mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28851193..28851244mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28851795..28851881mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28851971..28852053mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28852245..28852337mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28852682..28852798mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28858588..28858775mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28859434..28859500mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28871834..28871956mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28872033..28872185mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28872898..28872934mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28873058..28873182mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28874175..28874393mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28875440..28875533mRNAPaHa12g07080.1
exon
part_ofPaHa12g07080.1-exon-12-1787993825:28875632..28875696mRNAPaHa12g07080.1
