Anise · gene

Chr05.g42195

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

6,609
bp
Chr05:65,208,418–65,215,026
genomic location
Record overview

Feature identity

Identifier
Chr05.g42195
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
6,609 bp
Genomic location
Chr05:65,208,418–65,215,026
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
42345.XP_008779118.1,S,[histone deacetylase]
Gene Ontology
histone deacetylase | GO:0001101//response to acid chemical; GO:0006355//regulation of transcription, DNA-templated; GO:0006950//response to stress; GO:0006970//response to osmotic stress; GO:0008150//biological_process; GO:0009414//response to water deprivation; GO:0009415//response to water; GO:0009628//response to abiotic stimulus; GO:0009651//response to salt stress; GO:0009719//response to endogenous stimulus; GO:0009725//response to hormone; GO:0009737//response to abscisic acid; GO:0009889//regulation of biosynthetic process; GO:0009890//negative regulation of biosynthetic process; GO:0009892//negative regulation of metabolic process; GO:0010033//response to organic substance; GO:0010035//response to inorganic substance; GO:0010468//regulation of gene expression; GO:0010556//regulation of macromolecule biosynthetic process; GO:0010558//negative regulation of macromolecule biosynthetic process; GO:0010605//negative regulation of macromolecule metabolic process; GO:0010629//negative regulation of gene expression; GO:0019219//regulation of nucleobase-containing compound metabolic process; GO:0019222//regulation of metabolic process; GO:0031323//regulation of cellular metabolic process; GO:0031324//negative regulation of cellular metabolic process; GO:0031326//regulation of cellular biosynthetic process; GO:0031327//negative regulation of cellular biosynthetic process; GO:0033993//response to lipid; GO:0042221//response to chemical; GO:0045892//negative regulation of transcription, DNA-templated; GO:0045934//negative regulation of nucleobase-containing compound metabolic process; GO:0048519//negative regulation of biological process; GO:0048523//negative regulation of cellular process; GO:0050789//regulation of biological process; GO:0050794//regulation of cellular process; GO:0050896//response to stimulus; GO:0051171//regulation of nitrogen compound metabolic process; GO:0051172//negative regulation of nitrogen compound metabolic process; GO:0051252//regulation of RNA metabolic process; GO:0051253//negative regulation of RNA metabolic process; GO:0060255//regulation of macromolecule metabolic process; GO:0065007//biological regulation; GO:0080090//regulation of primary metabolic process; GO:0097305//response to alcohol; GO:1901700//response to oxygen-containing compound; GO:1902679//negative regulation of RNA biosynthetic process; GO:1903506//regulation of nucleic acid-templated transcription; GO:1903507//negative regulation of nucleic acid-templated transcription; GO:2000112//regulation of cellular macromolecule biosynthetic process; GO:2000113//negative regulation of cellular macromolecule biosynthetic process; GO:2001141//regulation of RNA biosynthetic process | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0005730//nucleolus; GO:0031974//membrane-enclosed lumen; GO:0031981//nuclear lumen; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043228//non-membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0043232//intracellular non-membrane-bounded organelle; GO:0043233//organelle lumen; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044428//nuclear part; GO:0044446//intracellular organelle part; GO:0044464//cell part; GO:0070013//intracellular organelle lumen | GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0005488//binding; GO:0043565//sequence-specific DNA binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
NR
XP_008779118.1 histone deacetylase HDT2-like [Phoenix dactylifera]
Swiss-Prot
Q6V9I6.1 RecName: Full=Histone deacetylase HDT1; AltName: Full=Histone deacetylase 2a; Short=HD2a; AltName: Full=ScHD2a [Solanum chacoense]
Biological context

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