Feature identity
- Identifier
- PaHa12g04970.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 684 bp
- Genomic location
- 12:23,989,639–23,990,488
- Strand
- +
Hass · mRNA
PaHa12g04970.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 684
- bp
- 12:23,989,639–23,990,488
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa12g04970
- eggNOG
- Preferred name: FAD2-2 | Seed ortholog: 3871.A0A4P1RL48 | COG: S | eggNOG OG: DUF3474@131567|B-2, DUF3474@1437183|FU-13, DUF3474@2231393|Wu-22, FA_desaturase@131567|Bc-9, FA_desaturase@1437183|JKw-35, FA_desaturase@2231393|QLa-45
- Gene Ontology
- GO:0005634 nucleus; GO:0005789 endoplasmic reticulum membrane; GO:0006631 fatty acid metabolic process; GO:0006633 fatty acid biosynthetic process; GO:0006636 unsaturated fatty acid biosynthetic process; GO:0043936 asexual sporulation resulting in formation of a cellular spore; GO:0045485 omega-6 fatty acid desaturase activity; GO:0050184 acyl-lipid omega-6 desaturase (cytochrome b5) activity; GO:0071398 cellular response to fatty acid; GO:0102985 acyl-CoA (9+3)-desaturase activity
- KEGG
- EC: ec:1.14.19.22, ec:1.14.19.6 | KO: K10256 | Pathway: 01040, 01100, 01212 | BRITE: 00001, 01000, 01004
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa12g04970.1-protein
derives_frommRNAPaHa12g04970.1
mRNAPaHa12g04970.1
part_ofgenePaHa12g04970
CDS
part_ofPaHa12g04970.1-CDS-12-1787993825:23989639..23989863mRNAPaHa12g04970.1
CDS
part_ofPaHa12g04970.1-CDS-12-1787993825:23990030..23990488mRNAPaHa12g04970.1
exon
part_ofPaHa12g04970.1-exon-12-1787993825:23989639..23989863mRNAPaHa12g04970.1
exon
part_ofPaHa12g04970.1-exon-12-1787993825:23990030..23990488mRNAPaHa12g04970.1
