Feature identity
- Identifier
- PaHa11g20390.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,949 bp
- Genomic location
- 11:52,043,550–52,049,149
- Strand
- −
Hass · mRNA
PaHa11g20390.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,949
- bp
- 11:52,043,550–52,049,149
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa11g20390
- eggNOG
- Preferred name: NLP1 | Seed ortholog: 337451.A0A3S3PKW9 | COG: S | eggNOG OG: PB1@131567|A-1*, PB1@1437183|AjO-26, PB1@2759|Al-8!, PB1@3193|sP-22, RWP-RK@131567|Fy-13, RWP-RK@33090|af-25
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0010167 response to nitrate; GO:0042128 nitrate assimilation; GO:0090548 response to nitrate starvation; GO:0097009 energy homeostasis
- KEGG
- KO: K13422 | Pathway: 04016, 04075 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa11g20390.1-protein
derives_frommRNAPaHa11g20390.1
mRNAPaHa11g20390.1
part_ofgenePaHa11g20390
CDS
part_ofPaHa11g20390.1-CDS-11-1787993825:52043550..52044442mRNAPaHa11g20390.1
CDS
part_ofPaHa11g20390.1-CDS-11-1787993825:52046335..52047382mRNAPaHa11g20390.1
CDS
part_ofPaHa11g20390.1-CDS-11-1787993825:52047460..52047507mRNAPaHa11g20390.1
CDS
part_ofPaHa11g20390.1-CDS-11-1787993825:52048190..52049149mRNAPaHa11g20390.1
exon
part_ofPaHa11g20390.1-exon-11-1787993825:52043550..52044442mRNAPaHa11g20390.1
exon
part_ofPaHa11g20390.1-exon-11-1787993825:52046335..52047382mRNAPaHa11g20390.1
exon
part_ofPaHa11g20390.1-exon-11-1787993825:52047460..52047507mRNAPaHa11g20390.1
exon
part_ofPaHa11g20390.1-exon-11-1787993825:52048190..52049149mRNAPaHa11g20390.1
