Anise · gene

Chr12.g82038

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

9,626
bp
Chr12:36,171,376–36,181,001
genomic location
Record overview

Feature identity

Identifier
Chr12.g82038
Feature type
gene
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
9,626 bp
Genomic location
Chr12:36,171,376–36,181,001
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4432.XP_010253662.1,I,[4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase]
Gene Ontology
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | GO:0001101//response to acid chemical; GO:0002376//immune system process; GO:0006081//cellular aldehyde metabolic process; GO:0006082//organic acid metabolic process; GO:0006090//pyruvate metabolic process; GO:0006629//lipid metabolic process; GO:0006644//phospholipid metabolic process; GO:0006720//isoprenoid metabolic process; GO:0006793//phosphorus metabolic process; GO:0006796//phosphate-containing compound metabolic process; GO:0006950//response to stress; GO:0006952//defense response; GO:0006955//immune response; GO:0007154//cell communication; GO:0007165//signal transduction; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0008299//isoprenoid biosynthetic process; GO:0008610//lipid biosynthetic process; GO:0008654//phospholipid biosynthetic process; GO:0009058//biosynthetic process; GO:0009240//isopentenyl diphosphate biosynthetic process; GO:0009605//response to external stimulus; GO:0009607//response to biotic stimulus; GO:0009617//response to bacterium; GO:0009627//systemic acquired resistance; GO:0009719//response to endogenous stimulus; GO:0009725//response to hormone; GO:0009751//response to salicylic acid; GO:0009814//defense response, incompatible interaction; GO:0009862//systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0009863//salicylic acid mediated signaling pathway; GO:0009987//cellular process; GO:0010033//response to organic substance; GO:0014070//response to organic cyclic compound; GO:0019288//isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; GO:0019637//organophosphate metabolic process; GO:0019682//glyceraldehyde-3-phosphate metabolic process; GO:0019752//carboxylic acid metabolic process; GO:0023052//signaling; GO:0032787//monocarboxylic acid metabolic process; GO:0032870//cellular response to hormone stimulus; GO:0035690//cellular response to drug; GO:0042221//response to chemical; GO:0042493//response to drug; GO:0043207//response to external biotic stimulus; GO:0043436//oxoacid metabolic process; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044249//cellular biosynthetic process; GO:0044255//cellular lipid metabolic process; GO:0044281//small molecule metabolic process; GO:0045087//innate immune response; GO:0046490//isopentenyl diphosphate metabolic process; GO:0046677//response to antibiotic; GO:0050789//regulation of biological process; GO:0050794//regulation of cellular process; GO:0050896//response to stimulus; GO:0051704//multi-organism process; GO:0051707//response to other organism; GO:0051716//cellular response to stimulus; GO:0055114//oxidation-reduction process; GO:0065007//biological regulation; GO:0070887//cellular response to chemical stimulus; GO:0071229//cellular response to acid chemical; GO:0071236//cellular response to antibiotic; GO:0071310//cellular response to organic substance; GO:0071407//cellular response to organic cyclic compound; GO:0071446//cellular response to salicylic acid stimulus; GO:0071495//cellular response to endogenous stimulus; GO:0071704//organic substance metabolic process; GO:0090407//organophosphate biosynthetic process; GO:0098542//defense response to other organism; GO:1901135//carbohydrate derivative metabolic process; GO:1901576//organic substance biosynthetic process; GO:1901700//response to oxygen-containing compound; GO:1901701//cellular response to oxygen-containing compound | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005737//cytoplasm; GO:0009507//chloroplast; GO:0009526//plastid envelope; GO:0009532//plastid stroma; GO:0009536//plastid; GO:0009570//chloroplast stroma; GO:0009941//chloroplast envelope; GO:0031967//organelle envelope; GO:0031975//envelope; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0044422//organelle part; GO:0044424//intracellular part; GO:0044434//chloroplast part; GO:0044435//plastid part; GO:0044444//cytoplasmic part; GO:0044446//intracellular organelle part; GO:0044464//cell part | GO:0003674//molecular_function; GO:0003824//catalytic activity; GO:0005488//binding; GO:0016491//oxidoreductase activity; GO:0016725//oxidoreductase activity, acting on CH or CH2 groups; GO:0046429//4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity; GO:0048037//cofactor binding; GO:0051536//iron-sulfur cluster binding; GO:0051539//4 iron, 4 sulfur cluster binding; GO:0051540//metal cluster binding; GO:0052592//oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor
KEGG
K03526 | gcpE, ispG
NR
RWR96677.1 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase ferredoxin, chloroplastic [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
F4K0E8.1 RecName: Full=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic; AltName: Full=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; AltName: Full=Protein CHLOROPLAST BIOGENESIS 4; AltName: Full=Protein CONSTITUTIVE SUBTILISIN 3; Flags: Precursor [Arabidopsis thaliana]
Biological context

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