Hass · mRNA

PaHa11g18410.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,279
bp
11:49,181,895–49,217,139
genomic location
Record overview

Feature identity

Identifier
PaHa11g18410.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
3,279 bp
Genomic location
11:49,181,895–49,217,139
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: POLD1 | Seed ortholog: 337451.A0A443PPX9 | COG: S | eggNOG OG: DNA_pol_B@131567|A-1, DNA_pol_B@2759|BM-8, DNA_pol_B_exo1@131567|A-1, DNA_pol_B_exo1@2759|Bk-8, zf-C4pol@131567|A-1*, zf-C4pol@2759|C-2
Gene Ontology
GO:0000731 DNA synthesis involved in DNA repair; GO:0003677 DNA binding; GO:0003682 chromatin binding; GO:0003684 damaged DNA binding; GO:0003887 DNA-directed DNA polymerase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006259 DNA metabolic process; GO:0006260 DNA replication; GO:0006261 DNA-templated DNA replication; GO:0006271 DNA strand elongation involved in DNA replication; GO:0006278 RNA-templated DNA biosynthetic process; GO:0006281 DNA repair; GO:0006287 base-excision repair, gap-filling; GO:0006297 nucleotide-excision repair, DNA gap filling; GO:0006303 double-strand break repair via nonhomologous end joining; GO:0008270 zinc ion binding; GO:0008296 3'-5'-DNA exonuclease activity; GO:0008310 single-stranded DNA 3'-5' DNA exonuclease activity; GO:0008408 3'-5' exonuclease activity; GO:0009411 response to UV; GO:0019899 enzyme binding; GO:0034061 DNA polymerase activity; GO:0034644 cellular response to UV; GO:0043137 DNA replication, removal of RNA primer; GO:0045004 DNA replication proofreading; GO:0045005 DNA-templated DNA replication maintenance of fidelity; GO:0055089 fatty acid homeostasis; GO:0060090 molecular adaptor activity; GO:0070987 error-free translesion synthesis; GO:0071897 DNA biosynthetic process; GO:1902983 DNA strand elongation involved in mitotic DNA replication; GO:1903459 mitotic DNA replication lagging strand elongation; GO:1904161 DNA synthesis involved in UV-damage excision repair
KEGG
EC: ec:2.7.7.7 | KO: K02327 | Pathway: 03030, 03410, 03420, 03430, 03440 | BRITE: 00001, 01000, 01612, 03032, 03400
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa11g18410.1-CDS-11-1787993825:49181895..49181982
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CDSPaHa11g18410.1-CDS-11-1787993825:49182074..49182161
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CDSPaHa11g18410.1-CDS-11-1787993825:49184228..49184301
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CDSPaHa11g18410.1-CDS-11-1787993825:49194857..49195017
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CDSPaHa11g18410.1-CDS-11-1787993825:49195095..49195184
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CDSPaHa11g18410.1-CDS-11-1787993825:49195285..49195359
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CDSPaHa11g18410.1-CDS-11-1787993825:49196484..49196555
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CDSPaHa11g18410.1-CDS-11-1787993825:49196649..49196821
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CDSPaHa11g18410.1-CDS-11-1787993825:49196922..49197036
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CDSPaHa11g18410.1-CDS-11-1787993825:49197396..49197509
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CDSPaHa11g18410.1-CDS-11-1787993825:49198389..49198468
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CDSPaHa11g18410.1-CDS-11-1787993825:49198572..49198659
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CDSPaHa11g18410.1-CDS-11-1787993825:49199965..49200021
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CDSPaHa11g18410.1-CDS-11-1787993825:49200201..49200266
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CDSPaHa11g18410.1-CDS-11-1787993825:49200424..49200519
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CDSPaHa11g18410.1-CDS-11-1787993825:49200648..49200755
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CDSPaHa11g18410.1-CDS-11-1787993825:49200879..49200977
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CDSPaHa11g18410.1-CDS-11-1787993825:49201092..49201211
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CDSPaHa11g18410.1-CDS-11-1787993825:49209813..49209899
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CDSPaHa11g18410.1-CDS-11-1787993825:49210820..49210891
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CDSPaHa11g18410.1-CDS-11-1787993825:49210981..49211047
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CDSPaHa11g18410.1-CDS-11-1787993825:49212791..49212882
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CDSPaHa11g18410.1-CDS-11-1787993825:49213019..49213096
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CDSPaHa11g18410.1-CDS-11-1787993825:49214385..49214522
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CDSPaHa11g18410.1-CDS-11-1787993825:49214633..49214768
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CDSPaHa11g18410.1-CDS-11-1787993825:49214881..49215076
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CDSPaHa11g18410.1-CDS-11-1787993825:49216221..49216380
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CDSPaHa11g18410.1-CDS-11-1787993825:49216463..49216569
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CDSPaHa11g18410.1-CDS-11-1787993825:49216670..49216780
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CDSPaHa11g18410.1-CDS-11-1787993825:49216869..49217139
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exonPaHa11g18410.1-exon-11-1787993825:49181895..49181982
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exonPaHa11g18410.1-exon-11-1787993825:49182074..49182161
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exonPaHa11g18410.1-exon-11-1787993825:49184228..49184301
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exonPaHa11g18410.1-exon-11-1787993825:49194857..49195017
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exonPaHa11g18410.1-exon-11-1787993825:49195095..49195184
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exonPaHa11g18410.1-exon-11-1787993825:49195285..49195359
part_of
exonPaHa11g18410.1-exon-11-1787993825:49196484..49196555
part_of
exonPaHa11g18410.1-exon-11-1787993825:49196649..49196821
part_of
exonPaHa11g18410.1-exon-11-1787993825:49196922..49197036
part_of
exonPaHa11g18410.1-exon-11-1787993825:49197396..49197509
part_of
exonPaHa11g18410.1-exon-11-1787993825:49198389..49198468
part_of
exonPaHa11g18410.1-exon-11-1787993825:49198572..49198659
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exonPaHa11g18410.1-exon-11-1787993825:49199965..49200021
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exonPaHa11g18410.1-exon-11-1787993825:49200201..49200266
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exonPaHa11g18410.1-exon-11-1787993825:49200424..49200519
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exonPaHa11g18410.1-exon-11-1787993825:49200648..49200755
part_of
exonPaHa11g18410.1-exon-11-1787993825:49200879..49200977
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exonPaHa11g18410.1-exon-11-1787993825:49201092..49201211
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exonPaHa11g18410.1-exon-11-1787993825:49209813..49209899
part_of
exonPaHa11g18410.1-exon-11-1787993825:49210820..49210891
part_of
exonPaHa11g18410.1-exon-11-1787993825:49210981..49211047
part_of
exonPaHa11g18410.1-exon-11-1787993825:49212791..49212882
part_of
exonPaHa11g18410.1-exon-11-1787993825:49213019..49213096
part_of
exonPaHa11g18410.1-exon-11-1787993825:49214385..49214522
part_of
exonPaHa11g18410.1-exon-11-1787993825:49214633..49214768
part_of
exonPaHa11g18410.1-exon-11-1787993825:49214881..49215076
part_of
exonPaHa11g18410.1-exon-11-1787993825:49216221..49216380
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exonPaHa11g18410.1-exon-11-1787993825:49216463..49216569
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exonPaHa11g18410.1-exon-11-1787993825:49216670..49216780
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exonPaHa11g18410.1-exon-11-1787993825:49216869..49217139
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