Hass · mRNA

PaHa11g17190.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,940
bp
11:47,494,384–47,516,014
genomic location
Record overview

Feature identity

Identifier
PaHa11g17190.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
2,940 bp
Genomic location
11:47,494,384–47,516,014
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC123086748 | Seed ortholog: 4432.A0A1U7ZDU5 | COG: S | eggNOG OG: DUF608@131567|A-1, DUF608@3193|Gy-12, DUF608@3398|UW-18, Glyco_hydr_116N@131567|A-1, Glyco_hydr_116N@3193|Gp-14, Glyco_hydr_116N@3398|Ru-20
Gene Ontology
GO:0000139 Golgi membrane; GO:0004348 glucosylceramidase activity; GO:0005789 endoplasmic reticulum membrane; GO:0005790 smooth endoplasmic reticulum; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006678 glucosylceramide metabolic process; GO:0006680 glucosylceramide catabolic process; GO:0007409 axonogenesis; GO:0007417 central nervous system development; GO:0008203 cholesterol metabolic process; GO:0008206 bile acid metabolic process; GO:0008422 beta-glucosidase activity; GO:0009247 glycolipid biosynthetic process; GO:0016020 membrane; GO:0016139 glycoside catabolic process; GO:0021954 central nervous system neuron development; GO:0030833 regulation of actin filament polymerization; GO:0031113 regulation of microtubule polymerization; GO:0046479 glycosphingolipid catabolic process; GO:0046527 glucosyltransferase activity; GO:0050295 steryl-beta-glucosidase activity; GO:0097035 regulation of membrane lipid distribution
KEGG
EC: ec:3.2.1.45 | KO: K17108 | Pathway: 00511, 00600, 01100 | BRITE: 00001, 01000 | CAZy: GH116|Glycoside Hydrolase Family 116.
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa11g17190.1-CDS-11-1787993825:47494384..47494395
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CDSPaHa11g17190.1-CDS-11-1787993825:47494493..47494572
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CDSPaHa11g17190.1-CDS-11-1787993825:47496300..47496357
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CDSPaHa11g17190.1-CDS-11-1787993825:47497324..47497434
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CDSPaHa11g17190.1-CDS-11-1787993825:47500234..47500290
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CDSPaHa11g17190.1-CDS-11-1787993825:47500481..47500554
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CDSPaHa11g17190.1-CDS-11-1787993825:47502499..47502598
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CDSPaHa11g17190.1-CDS-11-1787993825:47505181..47505251
part_of
CDSPaHa11g17190.1-CDS-11-1787993825:47505400..47505500
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CDSPaHa11g17190.1-CDS-11-1787993825:47505595..47505698
part_of
CDSPaHa11g17190.1-CDS-11-1787993825:47505801..47505854
part_of
CDSPaHa11g17190.1-CDS-11-1787993825:47506043..47506098
part_of
CDSPaHa11g17190.1-CDS-11-1787993825:47506278..47506316
part_of
CDSPaHa11g17190.1-CDS-11-1787993825:47506425..47506569
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CDSPaHa11g17190.1-CDS-11-1787993825:47507975..47508156
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CDSPaHa11g17190.1-CDS-11-1787993825:47508237..47508304
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CDSPaHa11g17190.1-CDS-11-1787993825:47512525..47512597
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CDSPaHa11g17190.1-CDS-11-1787993825:47512690..47512751
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CDSPaHa11g17190.1-CDS-11-1787993825:47512830..47513754
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CDSPaHa11g17190.1-CDS-11-1787993825:47514441..47514731
part_of
CDSPaHa11g17190.1-CDS-11-1787993825:47515738..47516014
part_of
exonPaHa11g17190.1-exon-11-1787993825:47494384..47494395
part_of
exonPaHa11g17190.1-exon-11-1787993825:47494493..47494572
part_of
exonPaHa11g17190.1-exon-11-1787993825:47496300..47496357
part_of
exonPaHa11g17190.1-exon-11-1787993825:47497324..47497434
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exonPaHa11g17190.1-exon-11-1787993825:47500234..47500290
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exonPaHa11g17190.1-exon-11-1787993825:47500481..47500554
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exonPaHa11g17190.1-exon-11-1787993825:47502499..47502598
part_of
exonPaHa11g17190.1-exon-11-1787993825:47505181..47505251
part_of
exonPaHa11g17190.1-exon-11-1787993825:47505400..47505500
part_of
exonPaHa11g17190.1-exon-11-1787993825:47505595..47505698
part_of
exonPaHa11g17190.1-exon-11-1787993825:47505801..47505854
part_of
exonPaHa11g17190.1-exon-11-1787993825:47506043..47506098
part_of
exonPaHa11g17190.1-exon-11-1787993825:47506278..47506316
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exonPaHa11g17190.1-exon-11-1787993825:47506425..47506569
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exonPaHa11g17190.1-exon-11-1787993825:47507975..47508156
part_of
exonPaHa11g17190.1-exon-11-1787993825:47508237..47508304
part_of
exonPaHa11g17190.1-exon-11-1787993825:47512525..47512597
part_of
exonPaHa11g17190.1-exon-11-1787993825:47512690..47512751
part_of
exonPaHa11g17190.1-exon-11-1787993825:47512830..47513754
part_of
exonPaHa11g17190.1-exon-11-1787993825:47514441..47514731
part_of
exonPaHa11g17190.1-exon-11-1787993825:47515738..47516014
part_of