Feature identity
- Identifier
- PaHa11g16980.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 657 bp
- Genomic location
- 11:47,200,750–47,206,150
- Strand
- +
Hass · mRNA
PaHa11g16980.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 657
- bp
- 11:47,200,750–47,206,150
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa11g16980
- eggNOG
- Preferred name: AGL12 | Seed ortholog: 337451.A0A3S3NCZ6 | COG: S | eggNOG OG: K-box@131567|A-1*, K-box@1437183|Bb-8, K-box@2759|v-6, SRF-TF@131567|A-1*, SRF-TF@2759|C-2!, SRF-TF@3193|so-21, SRF-TF@3398|APQ-23, SRF-TF@35493|bP-19
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0048364 root development
- KEGG
- KO: K04378, K04454, K09260, K09261, K09262, K09264, K09265, K12412, K19807, K19808, K27808 | Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 | BRITE: 00001, 03000, 03021, 04131
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa11g16980.1-protein
derives_frommRNAPaHa11g16980.1
mRNAPaHa11g16980.1
part_ofgenePaHa11g16980
CDS
part_ofPaHa11g16980.1-CDS-11-1787993825:47200750..47200931mRNAPaHa11g16980.1
CDS
part_ofPaHa11g16980.1-CDS-11-1787993825:47201092..47201170mRNAPaHa11g16980.1
CDS
part_ofPaHa11g16980.1-CDS-11-1787993825:47203206..47203267mRNAPaHa11g16980.1
CDS
part_ofPaHa11g16980.1-CDS-11-1787993825:47204780..47204879mRNAPaHa11g16980.1
CDS
part_ofPaHa11g16980.1-CDS-11-1787993825:47204973..47205014mRNAPaHa11g16980.1
CDS
part_ofPaHa11g16980.1-CDS-11-1787993825:47205858..47205899mRNAPaHa11g16980.1
CDS
part_ofPaHa11g16980.1-CDS-11-1787993825:47206001..47206150mRNAPaHa11g16980.1
exon
part_ofPaHa11g16980.1-exon-11-1787993825:47200750..47200931mRNAPaHa11g16980.1
exon
part_ofPaHa11g16980.1-exon-11-1787993825:47201092..47201170mRNAPaHa11g16980.1
exon
part_ofPaHa11g16980.1-exon-11-1787993825:47203206..47203267mRNAPaHa11g16980.1
exon
part_ofPaHa11g16980.1-exon-11-1787993825:47204780..47204879mRNAPaHa11g16980.1
exon
part_ofPaHa11g16980.1-exon-11-1787993825:47204973..47205014mRNAPaHa11g16980.1
exon
part_ofPaHa11g16980.1-exon-11-1787993825:47205858..47205899mRNAPaHa11g16980.1
exon
part_ofPaHa11g16980.1-exon-11-1787993825:47206001..47206150mRNAPaHa11g16980.1
