Feature identity
- Identifier
- PaHa11g16960.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 672 bp
- Genomic location
- 11:47,152,459–47,171,557
- Strand
- −
Hass · mRNA
PaHa11g16960.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 672
- bp
- 11:47,152,459–47,171,557
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa11g16960
- eggNOG
- Preferred name: AG2 | Seed ortholog: 337451.A0A3S3R0U7 | COG: S | eggNOG OG: K-box@131221|b-5, K-box@131567|A-1*, K-box@2759|O-4, K-box@3398|Mi-13, SRF-TF@131567|A-1*, SRF-TF@2759|C-2!, SRF-TF@3398|BXL-27, SRF-TF@35493|jY-20
- Gene Ontology
- GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0010214 seed coat development; GO:0046983 protein dimerization activity; GO:0048316 seed development; GO:0048440 carpel development; GO:0048481 plant ovule development; GO:0051302 regulation of cell division; GO:0071669 plant-type cell wall organization or biogenesis; GO:0080060 integument development; GO:0080155 regulation of double fertilization forming a zygote and endosperm; GO:0090376 seed trichome differentiation; GO:0090397 stigma papilla
- KEGG
- KO: K09264 | Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa11g16960.1-protein
derives_frommRNAPaHa11g16960.1
mRNAPaHa11g16960.1
part_ofgenePaHa11g16960
CDS
part_ofPaHa11g16960.1-CDS-11-1787993825:47152459..47152620mRNAPaHa11g16960.1
CDS
part_ofPaHa11g16960.1-CDS-11-1787993825:47153197..47153238mRNAPaHa11g16960.1
CDS
part_ofPaHa11g16960.1-CDS-11-1787993825:47153335..47153376mRNAPaHa11g16960.1
CDS
part_ofPaHa11g16960.1-CDS-11-1787993825:47154998..47155097mRNAPaHa11g16960.1
CDS
part_ofPaHa11g16960.1-CDS-11-1787993825:47155694..47155755mRNAPaHa11g16960.1
CDS
part_ofPaHa11g16960.1-CDS-11-1787993825:47157783..47157864mRNAPaHa11g16960.1
CDS
part_ofPaHa11g16960.1-CDS-11-1787993825:47171376..47171557mRNAPaHa11g16960.1
exon
part_ofPaHa11g16960.1-exon-11-1787993825:47152459..47152620mRNAPaHa11g16960.1
exon
part_ofPaHa11g16960.1-exon-11-1787993825:47153197..47153238mRNAPaHa11g16960.1
exon
part_ofPaHa11g16960.1-exon-11-1787993825:47153335..47153376mRNAPaHa11g16960.1
exon
part_ofPaHa11g16960.1-exon-11-1787993825:47154998..47155097mRNAPaHa11g16960.1
exon
part_ofPaHa11g16960.1-exon-11-1787993825:47155694..47155755mRNAPaHa11g16960.1
exon
part_ofPaHa11g16960.1-exon-11-1787993825:47157783..47157864mRNAPaHa11g16960.1
exon
part_ofPaHa11g16960.1-exon-11-1787993825:47171376..47171557mRNAPaHa11g16960.1
