Feature identity
- Identifier
- PaHa11g16600.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,112 bp
- Genomic location
- 11:46,713,133–46,718,741
- Strand
- +
Hass · mRNA
PaHa11g16600.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,112
- bp
- 11:46,713,133–46,718,741
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa11g16600
- eggNOG
- Preferred name: LOC104610126 | Seed ortholog: 337451.A0A3S3PKH1 | COG: S | eggNOG OG: ABC2_membrane@131567|O-4, ABC2_membrane@2759|Bwa-22, ABC2_membrane@3193|IbA-30, ABC2_membrane@3398|Oot-35, ABC2_membrane_7@131567|C-2, ABC2_membrane_7@2759|Lp-14, ABC2_membrane_7@3193|yc-22, ABC_tran|UQ33RK@131567, ABC_tran|UQ33RK@2759, ABC_tran|UQ33RK@58023
- Gene Ontology
- GO:0005515 protein binding; GO:0005634 nucleus; GO:0005886 plasma membrane; GO:0006810 transport; GO:0009611 response to wounding; GO:0009651 response to salt stress; GO:0009737 response to abscisic acid; GO:0009897 external side of plasma membrane; GO:0010222 stem vascular tissue pattern formation; GO:0010345 suberin biosynthetic process; GO:0010588 cotyledon vascular tissue pattern formation; GO:0015245 fatty acid transmembrane transporter activity; GO:0015562 efflux transmembrane transporter activity; GO:0015908 fatty acid transport; GO:0042335 cuticle development; GO:0042803 protein homodimerization activity; GO:0048316 seed development; GO:0055085 transmembrane transport; GO:0080051 cutin transport; GO:0090378 seed trichome elongation
- KEGG
- KO: K05681 | Pathway: 02010 | BRITE: 00001, 02000, 04090, 04147
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa11g16600.1-protein
derives_frommRNAPaHa11g16600.1
mRNAPaHa11g16600.1
part_ofgenePaHa11g16600
CDS
part_ofPaHa11g16600.1-CDS-11-1787993825:46713133..46713519mRNAPaHa11g16600.1
CDS
part_ofPaHa11g16600.1-CDS-11-1787993825:46714196..46714485mRNAPaHa11g16600.1
CDS
part_ofPaHa11g16600.1-CDS-11-1787993825:46714911..46715082mRNAPaHa11g16600.1
CDS
part_ofPaHa11g16600.1-CDS-11-1787993825:46715153..46715275mRNAPaHa11g16600.1
CDS
part_ofPaHa11g16600.1-CDS-11-1787993825:46715404..46715532mRNAPaHa11g16600.1
CDS
part_ofPaHa11g16600.1-CDS-11-1787993825:46715639..46715833mRNAPaHa11g16600.1
CDS
part_ofPaHa11g16600.1-CDS-11-1787993825:46716373..46716459mRNAPaHa11g16600.1
CDS
part_ofPaHa11g16600.1-CDS-11-1787993825:46716553..46716825mRNAPaHa11g16600.1
CDS
part_ofPaHa11g16600.1-CDS-11-1787993825:46717948..46718055mRNAPaHa11g16600.1
CDS
part_ofPaHa11g16600.1-CDS-11-1787993825:46718394..46718741mRNAPaHa11g16600.1
exon
part_ofPaHa11g16600.1-exon-11-1787993825:46713133..46713519mRNAPaHa11g16600.1
exon
part_ofPaHa11g16600.1-exon-11-1787993825:46714196..46714485mRNAPaHa11g16600.1
exon
part_ofPaHa11g16600.1-exon-11-1787993825:46714911..46715082mRNAPaHa11g16600.1
exon
part_ofPaHa11g16600.1-exon-11-1787993825:46715153..46715275mRNAPaHa11g16600.1
exon
part_ofPaHa11g16600.1-exon-11-1787993825:46715404..46715532mRNAPaHa11g16600.1
exon
part_ofPaHa11g16600.1-exon-11-1787993825:46715639..46715833mRNAPaHa11g16600.1
exon
part_ofPaHa11g16600.1-exon-11-1787993825:46716373..46716459mRNAPaHa11g16600.1
exon
part_ofPaHa11g16600.1-exon-11-1787993825:46716553..46716825mRNAPaHa11g16600.1
exon
part_ofPaHa11g16600.1-exon-11-1787993825:46717948..46718055mRNAPaHa11g16600.1
exon
part_ofPaHa11g16600.1-exon-11-1787993825:46718394..46718741mRNAPaHa11g16600.1
