Feature identity
- Identifier
- PaHa11g12100.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,011 bp
- Genomic location
- 11:38,604,892–38,608,917
- Strand
- −
Hass · mRNA
PaHa11g12100.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,011
- bp
- 11:38,604,892–38,608,917
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa11g12100
- eggNOG
- Preferred name: HMGB9 | Seed ortholog: 337451.A0A3S3R035 | COG: S | eggNOG OG: ARID@131567|A-1*, ARID@2759|N-4, ARID@33090|EH-11, HMG_box@131567|Aj-7, HMG_box@2759|Gn-11, HMG_box@3398|ALN-20
- Gene Ontology
- GO:0000741 karyogamy; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0010197 polar nucleus fusion
- KEGG
- EC: ec:2.1.1.354 | KO: K22483, K22748 | Pathway: 00310, 01100 | BRITE: 00001, 01000, 03000, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa11g12100.1-protein
derives_frommRNAPaHa11g12100.1
mRNAPaHa11g12100.1
part_ofgenePaHa11g12100
CDS
part_ofPaHa11g12100.1-CDS-11-1787993825:38604892..38605029mRNAPaHa11g12100.1
CDS
part_ofPaHa11g12100.1-CDS-11-1787993825:38605882..38606252mRNAPaHa11g12100.1
CDS
part_ofPaHa11g12100.1-CDS-11-1787993825:38608037..38608171mRNAPaHa11g12100.1
CDS
part_ofPaHa11g12100.1-CDS-11-1787993825:38608309..38608471mRNAPaHa11g12100.1
CDS
part_ofPaHa11g12100.1-CDS-11-1787993825:38608601..38608679mRNAPaHa11g12100.1
CDS
part_ofPaHa11g12100.1-CDS-11-1787993825:38608793..38608917mRNAPaHa11g12100.1
exon
part_ofPaHa11g12100.1-exon-11-1787993825:38604892..38605029mRNAPaHa11g12100.1
exon
part_ofPaHa11g12100.1-exon-11-1787993825:38605882..38606252mRNAPaHa11g12100.1
exon
part_ofPaHa11g12100.1-exon-11-1787993825:38608037..38608171mRNAPaHa11g12100.1
exon
part_ofPaHa11g12100.1-exon-11-1787993825:38608309..38608471mRNAPaHa11g12100.1
exon
part_ofPaHa11g12100.1-exon-11-1787993825:38608601..38608679mRNAPaHa11g12100.1
exon
part_ofPaHa11g12100.1-exon-11-1787993825:38608793..38608917mRNAPaHa11g12100.1
