Feature identity
- Identifier
- PaHa11g02410.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 6,789 bp
- Genomic location
- 11:5,538,043–5,579,379
- Strand
- +
Hass · mRNA
PaHa11g02410.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 6,789
- bp
- 11:5,538,043–5,579,379
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa11g02410
- eggNOG
- Preferred name: MED12 | Seed ortholog: 337451.A0A3S3NB75 | COG: S | eggNOG OG: Med12@2759|A-1
- Gene Ontology
- GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0003700 DNA-binding transcription factor activity; GO:0003712 transcription coregulator activity; GO:0003713 transcription coactivator activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0040034 regulation of development, heterochronic; GO:0042809 nuclear vitamin D receptor binding; GO:0046966 nuclear thyroid hormone receptor binding; GO:0061630 ubiquitin protein ligase activity; GO:0090213 regulation of radial pattern formation; GO:0140585 promoter-enhancer loop anchoring activity; GO:0140587 chromatin loop anchoring activity
- KEGG
- KO: K15162, K15163, K17433 | Pathway: 04919 | BRITE: 00001, 01610, 03011, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa11g02410.1-protein
derives_frommRNAPaHa11g02410.1
mRNAPaHa11g02410.1
part_ofgenePaHa11g02410
CDS
part_ofPaHa11g02410.1-CDS-11-1787993825:5538043..5538170mRNAPaHa11g02410.1
CDS
part_ofPaHa11g02410.1-CDS-11-1787993825:5544495..5544554mRNAPaHa11g02410.1
CDS
part_ofPaHa11g02410.1-CDS-11-1787993825:5544836..5544941mRNAPaHa11g02410.1
CDS
part_ofPaHa11g02410.1-CDS-11-1787993825:5552596..5552664mRNAPaHa11g02410.1
CDS
part_ofPaHa11g02410.1-CDS-11-1787993825:5558931..5558984mRNAPaHa11g02410.1
CDS
part_ofPaHa11g02410.1-CDS-11-1787993825:5559129..5559236mRNAPaHa11g02410.1
CDS
part_ofPaHa11g02410.1-CDS-11-1787993825:5562894..5563043mRNAPaHa11g02410.1
CDS
part_ofPaHa11g02410.1-CDS-11-1787993825:5563155..5563484mRNAPaHa11g02410.1
CDS
part_ofPaHa11g02410.1-CDS-11-1787993825:5563642..5566058mRNAPaHa11g02410.1
CDS
part_ofPaHa11g02410.1-CDS-11-1787993825:5572241..5574820mRNAPaHa11g02410.1
CDS
part_ofPaHa11g02410.1-CDS-11-1787993825:5577467..5577800mRNAPaHa11g02410.1
CDS
part_ofPaHa11g02410.1-CDS-11-1787993825:5578927..5579379mRNAPaHa11g02410.1
exon
part_ofPaHa11g02410.1-exon-11-1787993825:5538043..5538170mRNAPaHa11g02410.1
exon
part_ofPaHa11g02410.1-exon-11-1787993825:5544495..5544554mRNAPaHa11g02410.1
exon
part_ofPaHa11g02410.1-exon-11-1787993825:5544836..5544941mRNAPaHa11g02410.1
exon
part_ofPaHa11g02410.1-exon-11-1787993825:5552596..5552664mRNAPaHa11g02410.1
exon
part_ofPaHa11g02410.1-exon-11-1787993825:5558931..5558984mRNAPaHa11g02410.1
exon
part_ofPaHa11g02410.1-exon-11-1787993825:5559129..5559236mRNAPaHa11g02410.1
exon
part_ofPaHa11g02410.1-exon-11-1787993825:5562894..5563043mRNAPaHa11g02410.1
exon
part_ofPaHa11g02410.1-exon-11-1787993825:5563155..5563484mRNAPaHa11g02410.1
exon
part_ofPaHa11g02410.1-exon-11-1787993825:5563642..5566058mRNAPaHa11g02410.1
exon
part_ofPaHa11g02410.1-exon-11-1787993825:5572241..5574820mRNAPaHa11g02410.1
exon
part_ofPaHa11g02410.1-exon-11-1787993825:5577467..5577800mRNAPaHa11g02410.1
exon
part_ofPaHa11g02410.1-exon-11-1787993825:5578927..5579379mRNAPaHa11g02410.1
