Feature identity
- Identifier
- PaHa11g02080.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 4,872 bp
- Genomic location
- 11:4,448,028–4,478,923
- Strand
- +
Hass · mRNA
PaHa11g02080.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 4,872
- bp
- 11:4,448,028–4,478,923
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa11g02080
- eggNOG
- Preferred name: CDC5 | Seed ortholog: 337451.A0A443PLN8 | COG: COG5850 | eggNOG OG: Myb_Cef@2759|A-1, Myb_DNA-binding@131567|ji-21, Myb_DNA-binding@2759|ACr-25
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005576 extracellular region; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0042742 defense response to bacterium; GO:0050832 defense response to fungus
- KEGG
- KO: K12860 | Pathway: 03040 | BRITE: 00001, 03041, 03400
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa11g02080.1-protein
derives_frommRNAPaHa11g02080.1
mRNAPaHa11g02080.1
part_ofgenePaHa11g02080
CDS
part_ofPaHa11g02080.1-CDS-11-1787993825:4448028..4448204mRNAPaHa11g02080.1
CDS
part_ofPaHa11g02080.1-CDS-11-1787993825:4455368..4457089mRNAPaHa11g02080.1
CDS
part_ofPaHa11g02080.1-CDS-11-1787993825:4460213..4460494mRNAPaHa11g02080.1
CDS
part_ofPaHa11g02080.1-CDS-11-1787993825:4461172..4462349mRNAPaHa11g02080.1
CDS
part_ofPaHa11g02080.1-CDS-11-1787993825:4468366..4468594mRNAPaHa11g02080.1
CDS
part_ofPaHa11g02080.1-CDS-11-1787993825:4477640..4478923mRNAPaHa11g02080.1
exon
part_ofPaHa11g02080.1-exon-11-1787993825:4448028..4448204mRNAPaHa11g02080.1
exon
part_ofPaHa11g02080.1-exon-11-1787993825:4455368..4457089mRNAPaHa11g02080.1
exon
part_ofPaHa11g02080.1-exon-11-1787993825:4460213..4460494mRNAPaHa11g02080.1
exon
part_ofPaHa11g02080.1-exon-11-1787993825:4461172..4462349mRNAPaHa11g02080.1
exon
part_ofPaHa11g02080.1-exon-11-1787993825:4468366..4468594mRNAPaHa11g02080.1
exon
part_ofPaHa11g02080.1-exon-11-1787993825:4477640..4478923mRNAPaHa11g02080.1
