PaHa11g00810.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,794: bp
11:2,329,468–2,345,019: genomic location

Record overview

Feature identity

Identifier: PaHa11g00810.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 1,794 bp
Genomic location: 11:2,329,468–2,345,019
Strand: +

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa11g00810

eggNOG: Preferred name: LOC103714543 | Seed ortholog: 337451.A0A443PLF5 | COG: S | eggNOG OG: Myb_DNA-binding@131567|dl-20, Myb_DNA-binding@2759|yB-24!, Myb_DNA-binding@3193|Ans-30, Myb_DNA-binding@3398|Bpq-33
Gene Ontology: GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000723 telomere maintenance; GO:0000775 chromosome, centromeric region; GO:0000781 chromosome, telomeric region; GO:0000785 chromatin; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001015 snoRNA transcription by RNA polymerase II; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003691 double-stranded telomeric DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0006325 chromatin organization; GO:0006338 chromatin remodeling; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006366 transcription by RNA polymerase II; GO:0008150 biological_process; GO:0009303 rRNA transcription; GO:0010629 negative regulation of gene expression; GO:0010833 telomere maintenance via telomere lengthening; GO:0030674 protein-macromolecule adaptor activity; GO:0031154 culmination involved in sorocarp development; GO:0032211 negative regulation of telomere maintenance via telomerase; GO:0034080 CENP-A containing chromatin assembly; GO:0042162 telomeric repeat DNA binding; GO:0042393 histone binding; GO:0043035 chromatin insulator sequence binding; GO:0043565 sequence-specific DNA binding; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0045995 regulation of embryonic development; GO:0051302 regulation of cell division; GO:0051726 regulation of cell cycle; GO:0072686 mitotic spindle; GO:0090043 regulation of tubulin deacetylation; GO:0098654 CENP-A recruiting complex; GO:0140445 chromosome, telomeric repeat region; GO:0140672 ATAC complex
KEGG: EC: ec:2.7.11.1 | KO: K08864, K22485, K24536 | BRITE: 00001, 01000, 01001, 03032, 03036

Biological context