Feature identity
- Identifier
- PaHa11g00590.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,755 bp
- Genomic location
- 11:2,024,027–2,046,159
- Strand
- −
Hass · mRNA
PaHa11g00590.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,755
- bp
- 11:2,024,027–2,046,159
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa11g00590
- eggNOG
- Preferred name: SIGF | Seed ortholog: 337451.A0A443NLF5 | COG: S | eggNOG OG: Sigma70_r2@131567|AQM-18!, Sigma70_r2@3398|LAZ-28, Sigma70_r3@131567|C-2!, Sigma70_r3@3193|c-5, Sigma70_r4@131567|Bnn-30, Sigma70_r4@58023|GWX-43
- Gene Ontology
- GO:0005515 protein binding; GO:0006352 DNA-templated transcription initiation; GO:0009507 chloroplast; GO:0009536 plastid; GO:0016987 sigma factor activity; GO:0045893 positive regulation of DNA-templated transcription; GO:0071482 cellular response to light stimulus; GO:0071483 cellular response to blue light; GO:0090351 seedling development
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa11g00590.1-protein
derives_frommRNAPaHa11g00590.1
mRNAPaHa11g00590.1
part_ofgenePaHa11g00590
CDS
part_ofPaHa11g00590.1-CDS-11-1787993825:2024027..2024166mRNAPaHa11g00590.1
CDS
part_ofPaHa11g00590.1-CDS-11-1787993825:2024323..2024420mRNAPaHa11g00590.1
CDS
part_ofPaHa11g00590.1-CDS-11-1787993825:2024543..2024613mRNAPaHa11g00590.1
CDS
part_ofPaHa11g00590.1-CDS-11-1787993825:2027625..2027822mRNAPaHa11g00590.1
CDS
part_ofPaHa11g00590.1-CDS-11-1787993825:2030769..2030909mRNAPaHa11g00590.1
CDS
part_ofPaHa11g00590.1-CDS-11-1787993825:2034729..2034959mRNAPaHa11g00590.1
CDS
part_ofPaHa11g00590.1-CDS-11-1787993825:2035058..2035133mRNAPaHa11g00590.1
CDS
part_ofPaHa11g00590.1-CDS-11-1787993825:2035771..2036019mRNAPaHa11g00590.1
CDS
part_ofPaHa11g00590.1-CDS-11-1787993825:2036142..2036269mRNAPaHa11g00590.1
CDS
part_ofPaHa11g00590.1-CDS-11-1787993825:2039691..2039859mRNAPaHa11g00590.1
CDS
part_ofPaHa11g00590.1-CDS-11-1787993825:2040883..2041021mRNAPaHa11g00590.1
CDS
part_ofPaHa11g00590.1-CDS-11-1787993825:2045867..2045962mRNAPaHa11g00590.1
CDS
part_ofPaHa11g00590.1-CDS-11-1787993825:2046141..2046159mRNAPaHa11g00590.1
exon
part_ofPaHa11g00590.1-exon-11-1787993825:2024027..2024166mRNAPaHa11g00590.1
exon
part_ofPaHa11g00590.1-exon-11-1787993825:2024323..2024420mRNAPaHa11g00590.1
exon
part_ofPaHa11g00590.1-exon-11-1787993825:2024543..2024613mRNAPaHa11g00590.1
exon
part_ofPaHa11g00590.1-exon-11-1787993825:2027625..2027822mRNAPaHa11g00590.1
exon
part_ofPaHa11g00590.1-exon-11-1787993825:2030769..2030909mRNAPaHa11g00590.1
exon
part_ofPaHa11g00590.1-exon-11-1787993825:2034729..2034959mRNAPaHa11g00590.1
exon
part_ofPaHa11g00590.1-exon-11-1787993825:2035058..2035133mRNAPaHa11g00590.1
exon
part_ofPaHa11g00590.1-exon-11-1787993825:2035771..2036019mRNAPaHa11g00590.1
exon
part_ofPaHa11g00590.1-exon-11-1787993825:2036142..2036269mRNAPaHa11g00590.1
exon
part_ofPaHa11g00590.1-exon-11-1787993825:2039691..2039859mRNAPaHa11g00590.1
exon
part_ofPaHa11g00590.1-exon-11-1787993825:2040883..2041021mRNAPaHa11g00590.1
exon
part_ofPaHa11g00590.1-exon-11-1787993825:2045867..2045962mRNAPaHa11g00590.1
exon
part_ofPaHa11g00590.1-exon-11-1787993825:2046141..2046159mRNAPaHa11g00590.1
