Feature identity
- Identifier
- PaHa10g20940.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,560 bp
- Genomic location
- 10:51,923,532–51,929,390
- Strand
- −
Hass · mRNA
PaHa10g20940.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,560
- bp
- 10:51,923,532–51,929,390
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa10g20940
- eggNOG
- Preferred name: LOC104598910 | Seed ortholog: 337451.A0A443PTV1 | COG: COG1250 | eggNOG OG: 3HCDH@131567|LT-12, 3HCDH@35493|BGn-21, 3HCDH_N@131567|GO-11, 3HCDH_N@3398|Bdi-24, 3HCDH_N@35493|AgY-21
- Gene Ontology
- GO:0003857 (3S)-3-hydroxyacyl-CoA dehydrogenase (NAD+) activity; GO:0004165 delta(3)-delta(2)-enoyl-CoA isomerase activity; GO:0004300 enoyl-CoA hydratase activity; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005777 peroxisome; GO:0005829 cytosol; GO:0006635 fatty acid beta-oxidation; GO:0008692 3-hydroxybutyryl-CoA epimerase activity; GO:0009505 plant-type cell wall; GO:0009506 plasmodesma; GO:0009514 glyoxysome; GO:0018812 3-hydroxyacyl-CoA dehydratase activity
- KEGG
- EC: ec:1.1.1.211, ec:1.1.1.35, ec:4.2.1.17 | KO: K10527 | Pathway: 00071, 00592, 01100, 01110, 01212 | Module: M00087, M00113 | BRITE: 00001, 01000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa10g20940.1-protein
derives_frommRNAPaHa10g20940.1
mRNAPaHa10g20940.1
part_ofgenePaHa10g20940
CDS
part_ofPaHa10g20940.1-CDS-10-1787993825:51923532..51923567mRNAPaHa10g20940.1
CDS
part_ofPaHa10g20940.1-CDS-10-1787993825:51923642..51923780mRNAPaHa10g20940.1
CDS
part_ofPaHa10g20940.1-CDS-10-1787993825:51923860..51924008mRNAPaHa10g20940.1
CDS
part_ofPaHa10g20940.1-CDS-10-1787993825:51925341..51925462mRNAPaHa10g20940.1
CDS
part_ofPaHa10g20940.1-CDS-10-1787993825:51925922..51926043mRNAPaHa10g20940.1
CDS
part_ofPaHa10g20940.1-CDS-10-1787993825:51926255..51926301mRNAPaHa10g20940.1
CDS
part_ofPaHa10g20940.1-CDS-10-1787993825:51926415..51926508mRNAPaHa10g20940.1
CDS
part_ofPaHa10g20940.1-CDS-10-1787993825:51926934..51927097mRNAPaHa10g20940.1
CDS
part_ofPaHa10g20940.1-CDS-10-1787993825:51927199..51927320mRNAPaHa10g20940.1
CDS
part_ofPaHa10g20940.1-CDS-10-1787993825:51927433..51927607mRNAPaHa10g20940.1
CDS
part_ofPaHa10g20940.1-CDS-10-1787993825:51928921..51929007mRNAPaHa10g20940.1
CDS
part_ofPaHa10g20940.1-CDS-10-1787993825:51929088..51929390mRNAPaHa10g20940.1
exon
part_ofPaHa10g20940.1-exon-10-1787993825:51923532..51923567mRNAPaHa10g20940.1
exon
part_ofPaHa10g20940.1-exon-10-1787993825:51923642..51923780mRNAPaHa10g20940.1
exon
part_ofPaHa10g20940.1-exon-10-1787993825:51923860..51924008mRNAPaHa10g20940.1
exon
part_ofPaHa10g20940.1-exon-10-1787993825:51925341..51925462mRNAPaHa10g20940.1
exon
part_ofPaHa10g20940.1-exon-10-1787993825:51925922..51926043mRNAPaHa10g20940.1
exon
part_ofPaHa10g20940.1-exon-10-1787993825:51926255..51926301mRNAPaHa10g20940.1
exon
part_ofPaHa10g20940.1-exon-10-1787993825:51926415..51926508mRNAPaHa10g20940.1
exon
part_ofPaHa10g20940.1-exon-10-1787993825:51926934..51927097mRNAPaHa10g20940.1
exon
part_ofPaHa10g20940.1-exon-10-1787993825:51927199..51927320mRNAPaHa10g20940.1
exon
part_ofPaHa10g20940.1-exon-10-1787993825:51927433..51927607mRNAPaHa10g20940.1
exon
part_ofPaHa10g20940.1-exon-10-1787993825:51928921..51929007mRNAPaHa10g20940.1
exon
part_ofPaHa10g20940.1-exon-10-1787993825:51929088..51929390mRNAPaHa10g20940.1
