Feature identity
- Identifier
- PaHa10g20410.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 534 bp
- Genomic location
- 10:50,852,145–50,855,482
- Strand
- −
Hass · mRNA
PaHa10g20410.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 534
- bp
- 10:50,852,145–50,855,482
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa10g20410
- eggNOG
- Preferred name: LOC109017848 | Seed ortholog: 337451.A0A443PUH1 | COG: COG0557 | eggNOG OG: S1@131567|yl-44, SHS2_Rpb7-N@131567|C-2
- Gene Ontology
- GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; GO:0000956 nuclear-transcribed mRNA catabolic process; GO:0003697 single-stranded DNA binding; GO:0003727 single-stranded RNA binding; GO:0003899 DNA-directed RNA polymerase activity; GO:0003968 RNA-directed RNA polymerase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005665 RNA polymerase II, core complex; GO:0006351 DNA-templated transcription; GO:0006352 DNA-templated transcription initiation; GO:0006366 transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0006368 transcription elongation by RNA polymerase II; GO:0009410 response to xenobiotic stimulus; GO:0031369 translation initiation factor binding; GO:0045948 positive regulation of translational initiation; GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
- KEGG
- EC: ec:2.1.1.354 | KO: K03015 | Pathway: 03020, 03420 | BRITE: 00001, 01611, 03019, 03021, 03400
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa10g20410.1-protein
derives_frommRNAPaHa10g20410.1
mRNAPaHa10g20410.1
part_ofgenePaHa10g20410
CDS
part_ofPaHa10g20410.1-CDS-10-1787993825:50852145..50852210mRNAPaHa10g20410.1
CDS
part_ofPaHa10g20410.1-CDS-10-1787993825:50853311..50853379mRNAPaHa10g20410.1
CDS
part_ofPaHa10g20410.1-CDS-10-1787993825:50854569..50854634mRNAPaHa10g20410.1
CDS
part_ofPaHa10g20410.1-CDS-10-1787993825:50854955..50855005mRNAPaHa10g20410.1
CDS
part_ofPaHa10g20410.1-CDS-10-1787993825:50855118..50855283mRNAPaHa10g20410.1
CDS
part_ofPaHa10g20410.1-CDS-10-1787993825:50855367..50855482mRNAPaHa10g20410.1
exon
part_ofPaHa10g20410.1-exon-10-1787993825:50852145..50852210mRNAPaHa10g20410.1
exon
part_ofPaHa10g20410.1-exon-10-1787993825:50853311..50853379mRNAPaHa10g20410.1
exon
part_ofPaHa10g20410.1-exon-10-1787993825:50854569..50854634mRNAPaHa10g20410.1
exon
part_ofPaHa10g20410.1-exon-10-1787993825:50854955..50855005mRNAPaHa10g20410.1
exon
part_ofPaHa10g20410.1-exon-10-1787993825:50855118..50855283mRNAPaHa10g20410.1
exon
part_ofPaHa10g20410.1-exon-10-1787993825:50855367..50855482mRNAPaHa10g20410.1
