PaHa10g19890.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,408: bp
10:50,252,997–50,270,888: genomic location

Record overview

Feature identity

Identifier: PaHa10g19890.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 3,408 bp
Genomic location: 10:50,252,997–50,270,888
Strand: −

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa10g19890

eggNOG: Preferred name: CMTA2 | Seed ortholog: 337451.A0A3S4PSU8 | COG: S | eggNOG OG: CG-1@2759|A-1, CG-1@3193|Ak-9, CG-1@35493|P-5, CG-1@58023|Br-11, IQ@131567|aD-16, IQ@3398|BtT-25, IQ@35493|Alf-22, TIG@131567|Og-15, TIG@33090|Bjr-29, TIG@3398|Brh-30
Gene Ontology: GO:0000324 fungal-type vacuole; GO:0000785 chromatin; GO:0000976 transcription cis-regulatory region binding; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0001845 phagolysosome assembly; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0003713 transcription coactivator activity; GO:0004713 protein tyrosine kinase activity; GO:0005515 protein binding; GO:0005516 calmodulin binding; GO:0005524 ATP binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005783 endoplasmic reticulum; GO:0005789 endoplasmic reticulum membrane; GO:0005930 axoneme; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006633 fatty acid biosynthetic process; GO:0006909 phagocytosis; GO:0007286 spermatid development; GO:0007338 single fertilization; GO:0008150 biological_process; GO:0009416 response to light stimulus; GO:0010106 cellular response to iron ion starvation; GO:0014898 cardiac muscle hypertrophy in response to stress; GO:0016020 membrane; GO:0016059 negative regulation of opsin-mediated signaling pathway; GO:0030466 silent mating-type cassette heterochromatin formation; GO:0030670 phagocytic vesicle membrane; GO:0032010 phagolysosome; GO:0042826 histone deacetylase binding; GO:0043565 sequence-specific DNA binding; GO:0045834 positive regulation of lipid metabolic process; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0048255 mRNA stabilization; GO:0050885 neuromuscular process controlling balance; GO:0050918 positive chemotaxis; GO:0055089 fatty acid homeostasis; GO:0070417 cellular response to cold; GO:0070482 response to oxygen levels; GO:0070886 positive regulation of calcineurin-NFAT signaling cascade; GO:0071277 cellular response to calcium ion; GO:0071279 cellular response to cobalt ion; GO:0071456 cellular response to hypoxia; GO:0098554 cytoplasmic side of endoplasmic reticulum membrane; GO:0106254 lipid sensor activity; GO:0120316 sperm flagellum assembly; GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process
KEGG: KO: K21596 | Pathway: 03266, 04144 | BRITE: 00001, 03000

Biological context