PaHa10g18000.1

Record overview

Feature identity

Identifier: PaHa10g18000.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 1,251 bp
Genomic location: 10:47,144,808–47,149,034
Strand: −

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa10g18000

eggNOG: Preferred name: LOC107769893 | Seed ortholog: 337451.A0A3S3P640 | COG: S | eggNOG OG: RRM_1@131567|Gk-13, RRM_1@2759|DGP-27
Gene Ontology: GO:0000398 mRNA splicing, via spliceosome; GO:0000785 chromatin; GO:0003677 DNA binding; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0003730 mRNA 3'-UTR binding; GO:0005515 protein binding; GO:0005628 prospore membrane; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0005847 mRNA cleavage and polyadenylation specificity factor complex; GO:0006396 RNA processing; GO:0006406 mRNA export from nucleus; GO:0007535 donor selection; GO:0008143 poly(A) binding; GO:0008150 biological_process; GO:0010494 cytoplasmic stress granule; GO:0010608 post-transcriptional regulation of gene expression; GO:0016180 snRNA processing; GO:0016607 nuclear speck; GO:0017070 U6 snRNA binding; GO:0019899 enzyme binding; GO:0031124 mRNA 3'-end processing; GO:0031509 subtelomeric heterochromatin formation; GO:0034477 U6 snRNA 3'-end processing; GO:0042800 histone H3K4 methyltransferase activity; GO:0045291 mRNA trans splicing, SL addition; GO:0045815 transcription initiation-coupled chromatin remodeling; GO:0048188 Set1C/COMPASS complex; GO:0048255 mRNA stabilization; GO:0050265 RNA uridylyltransferase activity; GO:0051252 regulation of RNA metabolic process; GO:0060538 skeletal muscle organ development; GO:0071011 precatalytic spliceosome; GO:0140767 enzyme-substrate adaptor activity; GO:0140999 histone H3K4 trimethyltransferase activity; GO:0141005 transposable element silencing by heterochromatin formation; GO:0180010 co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway; GO:1902373 negative regulation of mRNA catabolic process; GO:1902794 siRNA-independent facultative heterochromatin formation; GO:1990817 poly(A) RNA polymerase activity
KEGG: EC: ec:2.1.1.354, ec:2.7.7.19, ec:2.7.7.52 | KO: K03102, K11422, K12891, K13172, K14573, K17391, K18709, K22414, K22611, K24983, K25078 | Pathway: 00310, 01100, 03008, 03040, 04320 | BRITE: 00001, 01000, 03009, 03019, 03036, 03041, 04990

Feature identity

Functional evidence

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