Feature identity
- Identifier
- PaHa10g17730.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 654 bp
- Genomic location
- 10:46,841,998–46,849,551
- Strand
- +
Hass · mRNA
PaHa10g17730.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 654
- bp
- 10:46,841,998–46,849,551
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa10g17730
- eggNOG
- Preferred name: DI19-2 | Seed ortholog: 337451.A0A443PTZ9 | COG: S | eggNOG OG: Di19_C@131567|A-1*, Di19_C@3193|G-3, zf-Di19@3398|Kd-15, zf-Di19@35493|X-6
- Gene Ontology
- GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005783 endoplasmic reticulum; GO:0009414 response to water deprivation; GO:0009507 chloroplast; GO:0009651 response to salt stress; GO:0009737 response to abscisic acid; GO:0009785 blue light signaling pathway; GO:0010161 red light signaling pathway; GO:0043565 sequence-specific DNA binding; GO:0045893 positive regulation of DNA-templated transcription; GO:1990578 perinuclear endoplasmic reticulum membrane
- KEGG
- EC: ec:2.3.2.27 | KO: K22376 | BRITE: 00001, 01000, 04121
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa10g17730.1-protein
derives_frommRNAPaHa10g17730.1
mRNAPaHa10g17730.1
part_ofgenePaHa10g17730
CDS
part_ofPaHa10g17730.1-CDS-10-1787993825:46841998..46842055mRNAPaHa10g17730.1
CDS
part_ofPaHa10g17730.1-CDS-10-1787993825:46842184..46842326mRNAPaHa10g17730.1
CDS
part_ofPaHa10g17730.1-CDS-10-1787993825:46843668..46843745mRNAPaHa10g17730.1
CDS
part_ofPaHa10g17730.1-CDS-10-1787993825:46843994..46844259mRNAPaHa10g17730.1
CDS
part_ofPaHa10g17730.1-CDS-10-1787993825:46849443..46849551mRNAPaHa10g17730.1
exon
part_ofPaHa10g17730.1-exon-10-1787993825:46841998..46842055mRNAPaHa10g17730.1
exon
part_ofPaHa10g17730.1-exon-10-1787993825:46842184..46842326mRNAPaHa10g17730.1
exon
part_ofPaHa10g17730.1-exon-10-1787993825:46843668..46843745mRNAPaHa10g17730.1
exon
part_ofPaHa10g17730.1-exon-10-1787993825:46843994..46844259mRNAPaHa10g17730.1
exon
part_ofPaHa10g17730.1-exon-10-1787993825:46849443..46849551mRNAPaHa10g17730.1
