Hass · mRNA

PaHa10g17630.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

834
bp
10:46,699,387–46,703,510
genomic location
Record overview

Feature identity

Identifier
PaHa10g17630.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
834 bp
Genomic location
10:46,699,387–46,703,510
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104598852 | Seed ortholog: 337451.A0A3S3NTT8 | COG: S | eggNOG OG: GATA@131567|A-1*, GATA@2759|x-6
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006338 chromatin remodeling; GO:0006355 regulation of DNA-templated transcription; GO:0007623 circadian rhythm; GO:0009267 cellular response to starvation; GO:0009416 response to light stimulus; GO:0009646 response to absence of light; GO:0009658 chloroplast organization; GO:0009733 response to auxin; GO:0009735 response to cytokinin; GO:0009736 cytokinin-activated signaling pathway; GO:0009739 response to gibberellin; GO:0009740 gibberellic acid mediated signaling pathway; GO:0009793 embryo development ending in seed dormancy; GO:0009845 seed germination; GO:0009908 flower development; GO:0009909 regulation of flower development; GO:0009910 negative regulation of flower development; GO:0009934 regulation of meristem structural organization; GO:0009938 negative regulation of gibberellic acid mediated signaling pathway; GO:0010029 regulation of seed germination; GO:0010114 response to red light; GO:0010151 chloroplast elongation; GO:0010167 response to nitrate; GO:0010187 negative regulation of seed germination; GO:0010255 glucose mediated signaling pathway; GO:0010380 regulation of chlorophyll biosynthetic process; GO:0010468 regulation of gene expression; GO:0030447 filamentous growth; GO:0031495 negative regulation of mating type switching; GO:0033696 heterochromatin boundary formation; GO:0036170 filamentous growth of a population of unicellular organisms in response to starvation; GO:0036176 response to neutral pH; GO:0036178 filamentous growth of a population of unicellular organisms in response to neutral pH; GO:0036180 filamentous growth of a population of unicellular organisms in response to biotic stimulus; GO:0043610 regulation of carbohydrate utilization; GO:0044182 filamentous growth of a population of unicellular organisms; GO:0045815 transcription initiation-coupled chromatin remodeling; GO:0045892 negative regulation of DNA-templated transcription; GO:0048437 floral organ development; GO:0048510 regulation of timing of transition from vegetative to reproductive phase; GO:0048527 lateral root development; GO:0048825 cotyledon development; GO:0080050 regulation of seed development; GO:0090693 plant organ senescence; GO:0099402 plant organ development; GO:1900430 positive regulation of filamentous growth of a population of unicellular organisms; GO:1900436 positive regulation of filamentous growth of a population of unicellular organisms in response to starvation; GO:1900442 positive regulation of filamentous growth of a population of unicellular organisms in response to neutral pH; GO:1900445 positive regulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus; GO:1900461 positive regulation of pseudohyphal growth by positive regulation of transcription from RNA polymerase II promoter; GO:1901698 response to nitrogen compound; GO:1902326 positive regulation of chlorophyll biosynthetic process; GO:1905177 tracheary element differentiation; GO:2000028 regulation of photoperiodism, flowering
KEGG
KO: K09184, K11648, K11770, K14972, K18658, K21630 | Pathway: 03082, 03250 | BRITE: 00001, 01009, 03000, 03019, 03021, 03036
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa10g17630.1-CDS-10-1787993825:46699387..46699451
part_of
CDSPaHa10g17630.1-CDS-10-1787993825:46699548..46699718
part_of
CDSPaHa10g17630.1-CDS-10-1787993825:46700687..46700756
part_of
CDSPaHa10g17630.1-CDS-10-1787993825:46702651..46702673
part_of
CDSPaHa10g17630.1-CDS-10-1787993825:46702758..46702863
part_of
CDSPaHa10g17630.1-CDS-10-1787993825:46703010..46703153
part_of
CDSPaHa10g17630.1-CDS-10-1787993825:46703256..46703510
part_of
exonPaHa10g17630.1-exon-10-1787993825:46699387..46699451
part_of
exonPaHa10g17630.1-exon-10-1787993825:46699548..46699718
part_of
exonPaHa10g17630.1-exon-10-1787993825:46700687..46700756
part_of
exonPaHa10g17630.1-exon-10-1787993825:46702651..46702673
part_of
exonPaHa10g17630.1-exon-10-1787993825:46702758..46702863
part_of
exonPaHa10g17630.1-exon-10-1787993825:46703010..46703153
part_of
exonPaHa10g17630.1-exon-10-1787993825:46703256..46703510
part_of