Feature identity
- Identifier
- PaHa10g16120.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,221 bp
- Genomic location
- 10:44,545,406–44,549,240
- Strand
- +
Hass · mRNA
PaHa10g16120.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,221
- bp
- 10:44,545,406–44,549,240
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa10g16120
- eggNOG
- Preferred name: COL13 | Seed ortholog: 337451.A0A443PTM6 | COG: S | eggNOG OG: CCT@131567|A-1*, CCT@2759|t-6, CCT@3193|GZ-11, CCT@3398|Iw-12, zf-B_box@2759|B-2!, zf-B_box@3193|BT-10, zf-B_box@3398|CP-11, zf-B_box@35493|AC-8
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0007623 circadian rhythm; GO:0009416 response to light stimulus; GO:0009637 response to blue light; GO:0010114 response to red light; GO:0010218 response to far red light
- KEGG
- KO: K12135 | Pathway: 04712 | BRITE: 00001
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa10g16120.1-protein
derives_frommRNAPaHa10g16120.1
mRNAPaHa10g16120.1
part_ofgenePaHa10g16120
CDS
part_ofPaHa10g16120.1-CDS-10-1787993825:44545406..44546014mRNAPaHa10g16120.1
CDS
part_ofPaHa10g16120.1-CDS-10-1787993825:44546700..44546909mRNAPaHa10g16120.1
CDS
part_ofPaHa10g16120.1-CDS-10-1787993825:44547294..44547571mRNAPaHa10g16120.1
CDS
part_ofPaHa10g16120.1-CDS-10-1787993825:44549117..44549240mRNAPaHa10g16120.1
exon
part_ofPaHa10g16120.1-exon-10-1787993825:44545406..44546014mRNAPaHa10g16120.1
exon
part_ofPaHa10g16120.1-exon-10-1787993825:44546700..44546909mRNAPaHa10g16120.1
exon
part_ofPaHa10g16120.1-exon-10-1787993825:44547294..44547571mRNAPaHa10g16120.1
exon
part_ofPaHa10g16120.1-exon-10-1787993825:44549117..44549240mRNAPaHa10g16120.1
