Hass · mRNA

PaHa10g12030.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

5,064
bp
10:36,675,837–36,706,030
genomic location
Record overview

Feature identity

Identifier
PaHa10g12030.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
5,064 bp
Genomic location
10:36,675,837–36,706,030
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC107813831 | Seed ortholog: 1590841.A0A2R6R5A1 | COG: S | eggNOG OG: CH@131567|A-1*, CH@2759|HS-11, CH@3193|AXG-21, CH@33090|ACI-19, Kinesin@131567|A-1*, Kinesin@2759|Bid-19, Kinesin@3193|KXy-33
Gene Ontology
GO:0001525 angiogenesis; GO:0001568 blood vessel development; GO:0001935 endothelial cell proliferation; GO:0002244 hematopoietic progenitor cell differentiation; GO:0003774 cytoskeletal motor activity; GO:0003777 microtubule motor activity; GO:0005085 guanyl-nucleotide exchange factor activity; GO:0005096 GTPase activator activity; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding; GO:0005739 mitochondrion; GO:0006915 apoptotic process; GO:0007017 microtubule-based process; GO:0007018 microtubule-based movement; GO:0007030 Golgi organization; GO:0007057 spindle assembly involved in female meiosis I; GO:0007059 chromosome segregation; GO:0007143 female meiotic nuclear division; GO:0007165 signal transduction; GO:0007254 JNK cascade; GO:0007264 small GTPase-mediated signal transduction; GO:0007266 Rho protein signal transduction; GO:0007601 visual perception; GO:0008150 biological_process; GO:0008569 minus-end-directed microtubule motor activity; GO:0010608 post-transcriptional regulation of gene expression; GO:0010763 positive regulation of fibroblast migration; GO:0019901 protein kinase binding; GO:0030032 lamellipodium assembly; GO:0030587 sorocarp development; GO:0031116 positive regulation of microtubule polymerization; GO:0031152 aggregation involved in sorocarp development; GO:0031267 small GTPase binding; GO:0032837 distributive segregation; GO:0042802 identical protein binding; GO:0043008 ATP-dependent protein binding; GO:0043015 gamma-tubulin binding; GO:0043065 positive regulation of apoptotic process; GO:0043547 positive regulation of GTPase activity; GO:0043615 astrocyte cell migration; GO:0045132 meiotic chromosome segregation; GO:0045218 zonula adherens maintenance; GO:0048013 ephrin receptor signaling pathway; GO:0048041 focal adhesion assembly; GO:0051010 microtubule plus-end binding; GO:0051296 establishment of meiotic spindle orientation; GO:0051304 chromosome separation; GO:0055113 epiboly involved in gastrulation with mouth forming second; GO:0060124 positive regulation of growth hormone secretion; GO:0071896 protein localization to adherens junction; GO:0090136 epithelial cell-cell adhesion; GO:0098974 postsynaptic actin cytoskeleton organization; GO:0099140 presynaptic actin cytoskeleton organization; GO:1900026 positive regulation of substrate adhesion-dependent cell spreading; GO:1905833 negative regulation of microtubule nucleation; GO:2000394 positive regulation of lamellipodium morphogenesis
KEGG
KO: K10406 | Pathway: 04814 | BRITE: 00001, 04812
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa10g12030.1-CDS-10-1787993825:36675837..36675868
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CDSPaHa10g12030.1-CDS-10-1787993825:36675970..36676075
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CDSPaHa10g12030.1-CDS-10-1787993825:36679252..36679320
part_of
CDSPaHa10g12030.1-CDS-10-1787993825:36680738..36680856
part_of
CDSPaHa10g12030.1-CDS-10-1787993825:36682329..36682421
part_of
CDSPaHa10g12030.1-CDS-10-1787993825:36689296..36689702
part_of
CDSPaHa10g12030.1-CDS-10-1787993825:36690348..36690455
part_of
CDSPaHa10g12030.1-CDS-10-1787993825:36690544..36690818
part_of
CDSPaHa10g12030.1-CDS-10-1787993825:36691614..36691862
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CDSPaHa10g12030.1-CDS-10-1787993825:36692470..36692588
part_of
CDSPaHa10g12030.1-CDS-10-1787993825:36692867..36692959
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CDSPaHa10g12030.1-CDS-10-1787993825:36693059..36693164
part_of
CDSPaHa10g12030.1-CDS-10-1787993825:36694515..36694575
part_of
CDSPaHa10g12030.1-CDS-10-1787993825:36697450..36697554
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CDSPaHa10g12030.1-CDS-10-1787993825:36697654..36697811
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CDSPaHa10g12030.1-CDS-10-1787993825:36697899..36698039
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CDSPaHa10g12030.1-CDS-10-1787993825:36698160..36698412
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CDSPaHa10g12030.1-CDS-10-1787993825:36698535..36698635
part_of
CDSPaHa10g12030.1-CDS-10-1787993825:36698755..36698826
part_of
CDSPaHa10g12030.1-CDS-10-1787993825:36699504..36699587
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CDSPaHa10g12030.1-CDS-10-1787993825:36700153..36700221
part_of
CDSPaHa10g12030.1-CDS-10-1787993825:36700506..36700587
part_of
CDSPaHa10g12030.1-CDS-10-1787993825:36701050..36701145
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CDSPaHa10g12030.1-CDS-10-1787993825:36701224..36701397
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CDSPaHa10g12030.1-CDS-10-1787993825:36701487..36701593
part_of
CDSPaHa10g12030.1-CDS-10-1787993825:36701701..36701776
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CDSPaHa10g12030.1-CDS-10-1787993825:36702019..36702136
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CDSPaHa10g12030.1-CDS-10-1787993825:36702223..36702473
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CDSPaHa10g12030.1-CDS-10-1787993825:36702580..36702743
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CDSPaHa10g12030.1-CDS-10-1787993825:36704482..36705027
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CDSPaHa10g12030.1-CDS-10-1787993825:36705137..36705513
part_of
CDSPaHa10g12030.1-CDS-10-1787993825:36705622..36705794
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CDSPaHa10g12030.1-CDS-10-1787993825:36705951..36706030
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exonPaHa10g12030.1-exon-10-1787993825:36675837..36675868
part_of
exonPaHa10g12030.1-exon-10-1787993825:36675970..36676075
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exonPaHa10g12030.1-exon-10-1787993825:36679252..36679320
part_of
exonPaHa10g12030.1-exon-10-1787993825:36680738..36680856
part_of
exonPaHa10g12030.1-exon-10-1787993825:36682329..36682421
part_of
exonPaHa10g12030.1-exon-10-1787993825:36689296..36689702
part_of
exonPaHa10g12030.1-exon-10-1787993825:36690348..36690455
part_of
exonPaHa10g12030.1-exon-10-1787993825:36690544..36690818
part_of
exonPaHa10g12030.1-exon-10-1787993825:36691614..36691862
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exonPaHa10g12030.1-exon-10-1787993825:36692470..36692588
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exonPaHa10g12030.1-exon-10-1787993825:36692867..36692959
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exonPaHa10g12030.1-exon-10-1787993825:36693059..36693164
part_of
exonPaHa10g12030.1-exon-10-1787993825:36694515..36694575
part_of
exonPaHa10g12030.1-exon-10-1787993825:36697450..36697554
part_of
exonPaHa10g12030.1-exon-10-1787993825:36697654..36697811
part_of
exonPaHa10g12030.1-exon-10-1787993825:36697899..36698039
part_of
exonPaHa10g12030.1-exon-10-1787993825:36698160..36698412
part_of
exonPaHa10g12030.1-exon-10-1787993825:36698535..36698635
part_of
exonPaHa10g12030.1-exon-10-1787993825:36698755..36698826
part_of
exonPaHa10g12030.1-exon-10-1787993825:36699504..36699587
part_of
exonPaHa10g12030.1-exon-10-1787993825:36700153..36700221
part_of
exonPaHa10g12030.1-exon-10-1787993825:36700506..36700587
part_of
exonPaHa10g12030.1-exon-10-1787993825:36701050..36701145
part_of
exonPaHa10g12030.1-exon-10-1787993825:36701224..36701397
part_of
exonPaHa10g12030.1-exon-10-1787993825:36701487..36701593
part_of
exonPaHa10g12030.1-exon-10-1787993825:36701701..36701776
part_of
exonPaHa10g12030.1-exon-10-1787993825:36702019..36702136
part_of
exonPaHa10g12030.1-exon-10-1787993825:36702223..36702473
part_of
exonPaHa10g12030.1-exon-10-1787993825:36702580..36702743
part_of
exonPaHa10g12030.1-exon-10-1787993825:36704482..36705027
part_of
exonPaHa10g12030.1-exon-10-1787993825:36705137..36705513
part_of
exonPaHa10g12030.1-exon-10-1787993825:36705622..36705794
part_of
exonPaHa10g12030.1-exon-10-1787993825:36705951..36706030
part_of