PaHa10g07030.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,343: bp
10:27,572,749–27,593,701: genomic location

Record overview

Feature identity

Identifier: PaHa10g07030.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 2,343 bp
Genomic location: 10:27,572,749–27,593,701
Strand: +

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa10g07030

eggNOG: Preferred name: RPS2 | Seed ortholog: 337451.A0A443PRT1 | COG: COG4886 | eggNOG OG: LRR_8@131567|C-2!, LRR_8@3398|AAc-26, NB-ARC@131567|AC-6, NB-ARC@3398|PLX-46, NB-ARC@35493|AQS-21
Gene Ontology: GO:0000166 nucleotide binding; GO:0002229 defense response to oomycetes; GO:0002239 response to oomycetes; GO:0002758 innate immune response-activating signaling pathway; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0003729 mRNA binding; GO:0005515 protein binding; GO:0005739 mitochondrion; GO:0006952 defense response; GO:0009409 response to cold; GO:0009414 response to water deprivation; GO:0009416 response to light stimulus; GO:0009615 response to virus; GO:0009626 plant-type hypersensitive response; GO:0009733 response to auxin; GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0010082 regulation of root meristem growth; GO:0010114 response to red light; GO:0010193 response to ozone; GO:0016301 kinase activity; GO:0030275 LRR domain binding; GO:0034052 positive regulation of plant-type hypersensitive response; GO:0034644 cellular response to UV; GO:0042742 defense response to bacterium; GO:0042802 identical protein binding; GO:0045088 regulation of innate immune response; GO:0046713 borate transport; GO:0050832 defense response to fungus; GO:0051607 defense response to virus; GO:0051707 response to other organism; GO:0071456 cellular response to hypoxia; GO:0140376 innate immune receptor activity; GO:2000071 regulation of defense response by callose deposition
KEGG: EC: ec:3.1.3.16 | KO: K13459 | Pathway: 04626 | BRITE: 00001

Biological context