Feature identity
- Identifier
- PaHa09g21810.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 231 bp
- Genomic location
- 9:51,637,635–51,642,276
- Strand
- −
Hass · mRNA
PaHa09g21810.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 231
- bp
- 9:51,637,635–51,642,276
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa09g21810
- eggNOG
- Preferred name: LOC123148240 | Seed ortholog: 4533.C0JAD6 | COG: S | eggNOG OG: Myb_CC_LHEQLE@131567|A-1*, Myb_CC_LHEQLE@3193|Ah-12, Myb_CC_LHEQLE@33090|X-8, Myb_CC_LHEQLE@4479|fk-23, Myb_DNA-binding@131567|dl-20, Myb_DNA-binding@2759|pK-22, Myb_DNA-binding@33090|BFG-31, Myb_DNA-binding@3398|CRT-34, Myb_DNA-binding@4479|NUa-46
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0048768 root hair cell tip growth; GO:0070273 phosphatidylinositol-4-phosphate binding; GO:1990841 promoter-specific chromatin binding
- KEGG
- EC: ec:6.3.4.5 | KO: K01940 | Pathway: 00220, 00250, 01100, 01110, 01230 | Module: M00029, M00844, M00845, M00978 | BRITE: 00001, 01000, 04147
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa09g21810.1-protein
derives_frommRNAPaHa09g21810.1
mRNAPaHa09g21810.1
part_ofgenePaHa09g21810
CDS
part_ofPaHa09g21810.1-CDS-9-1787993825:51637635..51637673mRNAPaHa09g21810.1
CDS
part_ofPaHa09g21810.1-CDS-9-1787993825:51638080..51638156mRNAPaHa09g21810.1
CDS
part_ofPaHa09g21810.1-CDS-9-1787993825:51640721..51640791mRNAPaHa09g21810.1
CDS
part_ofPaHa09g21810.1-CDS-9-1787993825:51642233..51642276mRNAPaHa09g21810.1
exon
part_ofPaHa09g21810.1-exon-9-1787993825:51637635..51637673mRNAPaHa09g21810.1
exon
part_ofPaHa09g21810.1-exon-9-1787993825:51638080..51638156mRNAPaHa09g21810.1
exon
part_ofPaHa09g21810.1-exon-9-1787993825:51640721..51640791mRNAPaHa09g21810.1
exon
part_ofPaHa09g21810.1-exon-9-1787993825:51642233..51642276mRNAPaHa09g21810.1
