Feature identity
- Identifier
- PaHa09g20100.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,209 bp
- Genomic location
- 9:49,285,631–49,289,954
- Strand
- −
Hass · mRNA
PaHa09g20100.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,209
- bp
- 9:49,285,631–49,289,954
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa09g20100
- eggNOG
- Preferred name: LOC109726863 | Seed ortholog: 337451.A0A3S3R7Z2 | COG: S | eggNOG OG: AP2@131567|DU-11, AP2@3193|KI-15, AP2@33090|Hp-14, AP2@3398|je-20, AP2@58023|Vz-18
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0001666 response to hypoxia; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005886 plasma membrane; GO:0009620 response to fungus; GO:0010468 regulation of gene expression; GO:0070483 detection of hypoxia; GO:2000280 regulation of root development
- KEGG
- KO: K09286 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa09g20100.1-protein
derives_frommRNAPaHa09g20100.1
mRNAPaHa09g20100.1
part_ofgenePaHa09g20100
CDS
part_ofPaHa09g20100.1-CDS-9-1787993825:49285631..49285737mRNAPaHa09g20100.1
CDS
part_ofPaHa09g20100.1-CDS-9-1787993825:49286474..49286560mRNAPaHa09g20100.1
CDS
part_ofPaHa09g20100.1-CDS-9-1787993825:49287071..49287132mRNAPaHa09g20100.1
CDS
part_ofPaHa09g20100.1-CDS-9-1787993825:49287279..49287987mRNAPaHa09g20100.1
CDS
part_ofPaHa09g20100.1-CDS-9-1787993825:49289711..49289954mRNAPaHa09g20100.1
exon
part_ofPaHa09g20100.1-exon-9-1787993825:49285631..49285737mRNAPaHa09g20100.1
exon
part_ofPaHa09g20100.1-exon-9-1787993825:49286474..49286560mRNAPaHa09g20100.1
exon
part_ofPaHa09g20100.1-exon-9-1787993825:49287071..49287132mRNAPaHa09g20100.1
exon
part_ofPaHa09g20100.1-exon-9-1787993825:49287279..49287987mRNAPaHa09g20100.1
exon
part_ofPaHa09g20100.1-exon-9-1787993825:49289711..49289954mRNAPaHa09g20100.1
