Feature identity
- Identifier
- PaHa09g19740.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,085 bp
- Genomic location
- 9:48,868,026–48,883,414
- Strand
- −
Hass · mRNA
PaHa09g19740.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,085
- bp
- 9:48,868,026–48,883,414
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa09g19740
- eggNOG
- Preferred name: LOC123157436 | Seed ortholog: 337451.A0A3S3R7W3 | COG: S | eggNOG OG: HA2@131567|Ay-8, HA2@2759|Gg-12, Helicase_C|KFC4E0@2759, OB_NTP_bind@131567|C-2, OB_NTP_bind@2759|UR-16
- Gene Ontology
- GO:0000182 rDNA binding; GO:0003723 RNA binding; GO:0003724 RNA helicase activity; GO:0003725 double-stranded RNA binding; GO:0003729 mRNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0019843 rRNA binding; GO:0042802 identical protein binding; GO:0043023 ribosomal large subunit binding; GO:0043484 regulation of RNA splicing; GO:0140297 DNA-binding transcription factor binding
- KEGG
- EC: ec:5.6.2.6 | KO: K12818 | Pathway: 03040 | BRITE: 00001, 01000, 03041
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa09g19740.1-protein
derives_frommRNAPaHa09g19740.1
mRNAPaHa09g19740.1
part_ofgenePaHa09g19740
CDS
part_ofPaHa09g19740.1-CDS-9-1787993825:48868026..48868033mRNAPaHa09g19740.1
CDS
part_ofPaHa09g19740.1-CDS-9-1787993825:48869681..48869706mRNAPaHa09g19740.1
CDS
part_ofPaHa09g19740.1-CDS-9-1787993825:48869825..48869890mRNAPaHa09g19740.1
CDS
part_ofPaHa09g19740.1-CDS-9-1787993825:48872045..48872179mRNAPaHa09g19740.1
CDS
part_ofPaHa09g19740.1-CDS-9-1787993825:48873343..48873542mRNAPaHa09g19740.1
CDS
part_ofPaHa09g19740.1-CDS-9-1787993825:48873776..48874007mRNAPaHa09g19740.1
CDS
part_ofPaHa09g19740.1-CDS-9-1787993825:48875890..48876075mRNAPaHa09g19740.1
CDS
part_ofPaHa09g19740.1-CDS-9-1787993825:48877277..48877437mRNAPaHa09g19740.1
CDS
part_ofPaHa09g19740.1-CDS-9-1787993825:48878726..48878929mRNAPaHa09g19740.1
CDS
part_ofPaHa09g19740.1-CDS-9-1787993825:48879685..48880096mRNAPaHa09g19740.1
CDS
part_ofPaHa09g19740.1-CDS-9-1787993825:48881985..48882201mRNAPaHa09g19740.1
CDS
part_ofPaHa09g19740.1-CDS-9-1787993825:48882423..48882503mRNAPaHa09g19740.1
CDS
part_ofPaHa09g19740.1-CDS-9-1787993825:48883070..48883116mRNAPaHa09g19740.1
CDS
part_ofPaHa09g19740.1-CDS-9-1787993825:48883305..48883414mRNAPaHa09g19740.1
exon
part_ofPaHa09g19740.1-exon-9-1787993825:48868026..48868033mRNAPaHa09g19740.1
exon
part_ofPaHa09g19740.1-exon-9-1787993825:48869681..48869706mRNAPaHa09g19740.1
exon
part_ofPaHa09g19740.1-exon-9-1787993825:48869825..48869890mRNAPaHa09g19740.1
exon
part_ofPaHa09g19740.1-exon-9-1787993825:48872045..48872179mRNAPaHa09g19740.1
exon
part_ofPaHa09g19740.1-exon-9-1787993825:48873343..48873542mRNAPaHa09g19740.1
exon
part_ofPaHa09g19740.1-exon-9-1787993825:48873776..48874007mRNAPaHa09g19740.1
exon
part_ofPaHa09g19740.1-exon-9-1787993825:48875890..48876075mRNAPaHa09g19740.1
exon
part_ofPaHa09g19740.1-exon-9-1787993825:48877277..48877437mRNAPaHa09g19740.1
exon
part_ofPaHa09g19740.1-exon-9-1787993825:48878726..48878929mRNAPaHa09g19740.1
exon
part_ofPaHa09g19740.1-exon-9-1787993825:48879685..48880096mRNAPaHa09g19740.1
exon
part_ofPaHa09g19740.1-exon-9-1787993825:48881985..48882201mRNAPaHa09g19740.1
exon
part_ofPaHa09g19740.1-exon-9-1787993825:48882423..48882503mRNAPaHa09g19740.1
exon
part_ofPaHa09g19740.1-exon-9-1787993825:48883070..48883116mRNAPaHa09g19740.1
exon
part_ofPaHa09g19740.1-exon-9-1787993825:48883305..48883414mRNAPaHa09g19740.1
