Hass · mRNA

PaHa09g19120.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

690
bp
9:48,051,975–48,063,132
genomic location
Record overview

Feature identity

Identifier
PaHa09g19120.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
690 bp
Genomic location
9:48,051,975–48,063,132
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC116199562 | Seed ortholog: 337451.A0A3S3PQP6 | COG: S | eggNOG OG: Ank_4@131567|CR-12, Ank_4@2759|Rf-19
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000976 transcription cis-regulatory region binding; GO:0001558 regulation of cell growth; GO:0003674 molecular_function; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005635 nuclear envelope; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005774 vacuolar membrane; GO:0005783 endoplasmic reticulum; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0007029 endoplasmic reticulum organization; GO:0008150 biological_process; GO:0012505 endomembrane system; GO:0030688 preribosome, small subunit precursor; GO:0030950 establishment or maintenance of actin cytoskeleton polarity; GO:0031468 nuclear membrane reassembly; GO:0031929 TOR signaling; GO:0031932 TORC2 complex; GO:0042254 ribosome biogenesis; GO:0045167 asymmetric protein localization involved in cell fate determination; GO:0045893 positive regulation of DNA-templated transcription; GO:0051653 spindle localization; GO:0055059 asymmetric neuroblast division
KEGG
KO: K06867 | Pathway: 01523, 04010, 04014, 04024, 04062, 04064, 04066, 04071, 04151, 04210, 04211, 04218, 04380, 04613, 04620, 04621, 04622, 04623, 04625, 04657, 04658, 04659, 04660, 04662, 04668, 04722, 04917, 04920, 04926, 04931, 04932, 04933, 04936, 05010, 05022, 05030, 05132, 05133, 05134, 05135, 05140, 05142, 05145, 05146, 05152, 05160, 05161, 05162, 05163, 05164, 05165, 05166, 05167, 05168, 05169, 05170, 05171, 05200, 05202, 05203, 05206, 05207, 05208, 05212, 05215, 05220, 05221, 05222, 05235, 05321, 05415, 05417, 05418 | BRITE: 00001
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa09g19120.1-CDS-9-1787993825:48051975..48052055
part_of
CDSPaHa09g19120.1-CDS-9-1787993825:48052912..48052999
part_of
CDSPaHa09g19120.1-CDS-9-1787993825:48059335..48059399
part_of
CDSPaHa09g19120.1-CDS-9-1787993825:48061656..48061724
part_of
CDSPaHa09g19120.1-CDS-9-1787993825:48061816..48061865
part_of
CDSPaHa09g19120.1-CDS-9-1787993825:48061992..48062078
part_of
CDSPaHa09g19120.1-CDS-9-1787993825:48062883..48063132
part_of
exonPaHa09g19120.1-exon-9-1787993825:48051975..48052055
part_of
exonPaHa09g19120.1-exon-9-1787993825:48052912..48052999
part_of
exonPaHa09g19120.1-exon-9-1787993825:48059335..48059399
part_of
exonPaHa09g19120.1-exon-9-1787993825:48061656..48061724
part_of
exonPaHa09g19120.1-exon-9-1787993825:48061816..48061865
part_of
exonPaHa09g19120.1-exon-9-1787993825:48061992..48062078
part_of
exonPaHa09g19120.1-exon-9-1787993825:48062883..48063132
part_of