Feature identity
- Identifier
- PaHa09g16260.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,395 bp
- Genomic location
- 9:43,939,446–43,944,324
- Strand
- −
Hass · mRNA
PaHa09g16260.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,395
- bp
- 9:43,939,446–43,944,324
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa09g16260
- eggNOG
- Preferred name: AP2 | Seed ortholog: 337451.A0A3S3NW26 | COG: S | eggNOG OG: AP2@131567|Eo-12, AP2@33090|Xr-18, AP2@3398|DRe-29, AP2@58023|AYn-23
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0001222 transcription corepressor binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0006355 regulation of DNA-templated transcription; GO:0009642 response to light intensity; GO:0009658 chloroplast organization; GO:0009909 regulation of flower development; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0010629 negative regulation of gene expression; GO:0042802 identical protein binding; GO:0043565 sequence-specific DNA binding; GO:0045824 negative regulation of innate immune response; GO:0080050 regulation of seed development; GO:1905392 plant organ morphogenesis
- KEGG
- KO: K09284 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa09g16260.1-protein
derives_frommRNAPaHa09g16260.1
mRNAPaHa09g16260.1
part_ofgenePaHa09g16260
CDS
part_ofPaHa09g16260.1-CDS-9-1787993825:43939446..43939610mRNAPaHa09g16260.1
CDS
part_ofPaHa09g16260.1-CDS-9-1787993825:43941008..43941112mRNAPaHa09g16260.1
CDS
part_ofPaHa09g16260.1-CDS-9-1787993825:43942256..43942389mRNAPaHa09g16260.1
CDS
part_ofPaHa09g16260.1-CDS-9-1787993825:43942661..43942761mRNAPaHa09g16260.1
CDS
part_ofPaHa09g16260.1-CDS-9-1787993825:43942874..43942918mRNAPaHa09g16260.1
CDS
part_ofPaHa09g16260.1-CDS-9-1787993825:43943097..43943242mRNAPaHa09g16260.1
CDS
part_ofPaHa09g16260.1-CDS-9-1787993825:43943338..43943425mRNAPaHa09g16260.1
CDS
part_ofPaHa09g16260.1-CDS-9-1787993825:43943513..43943543mRNAPaHa09g16260.1
CDS
part_ofPaHa09g16260.1-CDS-9-1787993825:43943636..43943661mRNAPaHa09g16260.1
CDS
part_ofPaHa09g16260.1-CDS-9-1787993825:43943771..43944324mRNAPaHa09g16260.1
exon
part_ofPaHa09g16260.1-exon-9-1787993825:43939446..43939610mRNAPaHa09g16260.1
exon
part_ofPaHa09g16260.1-exon-9-1787993825:43941008..43941112mRNAPaHa09g16260.1
exon
part_ofPaHa09g16260.1-exon-9-1787993825:43942256..43942389mRNAPaHa09g16260.1
exon
part_ofPaHa09g16260.1-exon-9-1787993825:43942661..43942761mRNAPaHa09g16260.1
exon
part_ofPaHa09g16260.1-exon-9-1787993825:43942874..43942918mRNAPaHa09g16260.1
exon
part_ofPaHa09g16260.1-exon-9-1787993825:43943097..43943242mRNAPaHa09g16260.1
exon
part_ofPaHa09g16260.1-exon-9-1787993825:43943338..43943425mRNAPaHa09g16260.1
exon
part_ofPaHa09g16260.1-exon-9-1787993825:43943513..43943543mRNAPaHa09g16260.1
exon
part_ofPaHa09g16260.1-exon-9-1787993825:43943636..43943661mRNAPaHa09g16260.1
exon
part_ofPaHa09g16260.1-exon-9-1787993825:43943771..43944324mRNAPaHa09g16260.1
