Hass · mRNA

PaHa09g13440.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

543
bp
9:38,874,292–38,877,911
genomic location
Record overview

Feature identity

Identifier
PaHa09g13440.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
543 bp
Genomic location
9:38,874,292–38,877,911
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: NFYB5 | Seed ortholog: 337451.A0A3S3R4M1 | COG: COG2036 | eggNOG OG: CBFD_NFYB_HMF@131567|BS-10, CBFD_NFYB_HMF@1437183|DDP-36, CBFD_NFYB_HMF@2759|GM-15, CBFD_NFYB_HMF@3398|CFS-33
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006109 regulation of carbohydrate metabolic process; GO:0006351 DNA-templated transcription; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006366 transcription by RNA polymerase II; GO:0009408 response to heat; GO:0009414 response to water deprivation; GO:0009738 abscisic acid-activated signaling pathway; GO:0009785 blue light signaling pathway; GO:0009793 embryo development ending in seed dormancy; GO:0009888 tissue development; GO:0010262 somatic embryogenesis; GO:0010468 regulation of gene expression; GO:0019760 glucosinolate metabolic process; GO:0040029 epigenetic regulation of gene expression; GO:0043066 negative regulation of apoptotic process; GO:0043410 positive regulation of MAPK cascade; GO:0043457 regulation of cellular respiration; GO:0043708 cell adhesion involved in biofilm formation; GO:0045678 positive regulation of R7 cell differentiation; GO:0045723 positive regulation of fatty acid biosynthetic process; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0048579 negative regulation of long-day photoperiodism, flowering; GO:0048749 compound eye development; GO:0051512 positive regulation of unidimensional cell growth; GO:0060237 regulation of fungal-type cell wall organization; GO:0071280 cellular response to copper ion; GO:0071466 cellular response to xenobiotic stimulus; GO:0140185 siRNA-mediated silent mating type cassette region heterochromatin formation; GO:1990830 cellular response to leukemia inhibitory factor
KEGG
EC: ec:6.5.1.3 | KO: K08065 | Pathway: 04612, 05152, 05166 | BRITE: 00001, 03000
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa09g13440.1-CDS-9-1787993825:38874292..38874638
part_of
CDSPaHa09g13440.1-CDS-9-1787993825:38877716..38877911
part_of
exonPaHa09g13440.1-exon-9-1787993825:38874292..38874638
part_of
exonPaHa09g13440.1-exon-9-1787993825:38877716..38877911
part_of